Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001359.1 Corchorus olitorius cultivar O-4 contig01359, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39


Found at i:932 original size:1 final size:1

Alignment explanation


    Indices: 921--952  Score: 55
    Period size: 1  Copynumber: 32.0  Consensus size: 1

        911 CACTCTATTC

                *                           
        921 TTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

        953 CCACAATTTG


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   1   29  1.00

ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97


Consensus pattern (1 bp):   
T
Done.