genome.fa.s13590.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013590.1 Corchorus olitorius cultivar O-4 contig13623, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141966

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3776--3845	6	11.2	6	71	19	54	15	35	1	47	1.55
3781--3845	18	3.4	18	81	14	69	15	35	1	47	1.55
8401--8516	24	4.8	24	87	6	162	23	18	31	27	1.97
9988--10092	32	3.3	31	81	7	122	8	12	38	40	1.73
9988--10092	16	6.6	16	74	8	97	8	12	38	40	1.73
10102--10160	6	10.2	6	89	7	86	0	27	52	20	1.47
10106--10160	23	2.4	23	100	0	110	0	27	50	21	1.49
10102--10160	17	3.4	18	88	6	86	0	27	52	20	1.47
10646--10671	9	2.9	9	100	0	52	69	7	0	23	1.14
10899--10928	12	2.4	13	94	5	53	46	0	3	50	1.18
12562--12604	21	2.0	21	90	0	68	23	39	11	25	1.88
13576--13601	11	2.4	11	100	0	52	69	7	15	7	1.35
14198--14233	18	1.9	18	88	5	54	36	22	2	38	1.69
16426--16496	33	2.2	33	82	10	83	14	21	47	16	1.81
19376--19422	22	2.3	19	85	10	58	65	19	4	10	1.39
30999--31034	16	2.2	16	90	0	54	8	16	38	36	1.79
31552--31590	21	1.9	20	84	5	51	58	10	12	17	1.61
44111--44154	16	2.9	15	90	6	63	79	0	9	11	0.93
46725--46754	2	15.0	2	100	0	60	50	0	0	50	1.00
53012--53072	29	2.1	30	87	3	88	42	3	3	50	1.34
54878--54921	21	2.1	21	100	0	88	40	13	22	22	1.89
63043--63088	3	15.3	3	100	0	92	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63253--63290	11	3.5	11	85	10	51	57	2	0	39	1.12
64491--64520	14	2.1	14	93	0	51	70	23	0	6	1.11
65712--65755	19	2.3	19	88	0	70	25	13	18	43	1.86
66138--66251	54	2.1	55	86	4	160	12	18	13	56	1.67
66150--66301	54	2.8	56	81	8	170	12	16	15	55	1.68
70279--70492	70	3.1	70	99	0	419	21	11	23	42	1.86
70599--70689	42	2.2	42	96	2	166	39	20	5	34	1.76
72529--72577	16	3.1	16	96	0	89	34	0	14	51	1.43
73809--73853	21	2.1	22	87	4	65	46	0	0	53	1.00
75057--75098	22	2.0	22	90	4	68	16	28	9	45	1.79
75151--75257	51	2.1	51	81	5	119	22	24	11	42	1.86
85638--86093	39	11.6	38	79	11	431	32	16	15	34	1.91
85613--86084	78	6.0	78	85	7	539	32	17	15	35	1.90
93980--94014	17	2.0	17	88	5	52	37	5	8	48	1.58
96248--96350	51	2.0	51	85	7	138	24	21	13	40	1.89
97077--97108	16	1.9	17	93	6	57	18	9	9	62	1.52
98233--98268	18	1.9	19	88	5	56	58	8	0	33	1.28
98545--98592	24	2.0	24	95	0	87	39	0	27	33	1.57
99389--99436	24	2.0	24	95	0	87	39	0	27	33	1.57
100919--101115	99	2.0	100	92	1	333	40	13	20	25	1.89
103704--103785	41	2.0	41	100	0	164	36	14	14	34	1.87
107923--107975	20	2.7	20	90	0	88	22	28	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109021--109046	12	2.2	12	100	0	52	53	15	7	23	1.67
111077--111515	67	6.7	67	84	3	389	36	12	22	28	1.91
111105--111729	64	9.6	64	85	3	576	36	14	21	27	1.92
112052--112104	27	2.0	27	88	7	81	37	9	16	35	1.82
112000--112154	77	2.0	77	89	0	238	35	10	23	29	1.89
112450--112523	27	2.7	27	91	4	123	17	17	27	37	1.92
116860--117218	72	5.0	72	91	1	558	32	18	28	20	1.96
117589--117656	35	1.9	35	90	0	109	23	17	35	23	1.95
137064--137153	46	2.0	43	89	8	137	43	16	14	25	1.86
138842--138881	19	2.2	19	90	4	64	32	20	2	45	1.64
140320--140363	2	20.5	2	86	13	61	45	0	6	47	1.29

Tables:   1

The End!