Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013594.1 Corchorus olitorius cultivar O-4 contig13627, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63312

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15804--15845
21
2.0
21
100
0
84
23
19
14
42
1.87
28648--28729
31
2.6
31
81
14
105
39
17
9
34
1.82
28996--29069
29
2.6
29
80
4
87
20
32
25
21
1.97
31143--31411
53
5.1
53
97
0
511
51
17
7
23
1.71
32130--32204
31
2.4
31
86
4
116
16
20
29
34
1.94
36173--36208
19
1.9
18
88
5
54
33
22
2
41
1.68
37050--37085
18
2.1
18
89
5
56
38
11
5
44
1.63
39173--39289
33
3.5
33
88
1
162
1
33
45
19
1.61
41024--41062
11
3.7
10
83
10
51
30
20
7
41
1.80
41012--41063
22
2.4
22
87
6
70
34
17
7
40
1.78
44141--44378
125
1.9
125
85
1
325
39
16
11
31
1.85
46215--46260
2
24.0
2
84
8
60
52
4
0
43
1.21
49124--49169
23
2.0
23
86
0
65
34
6
15
43
1.72
51905--51945
21
2.0
21
95
0
73
26
4
17
51
1.65
52133--52171
17
2.3
17
86
0
51
30
2
2
64
1.21
57841--57886
23
2.0
23
91
4
76
41
8
8
41
1.67
57865--58078
52
4.1
52
91
2
342
29
17
14
39
1.88
57867--57951
25
3.3
25
64
6
71
29
16
10
43
1.81
58047--58181
34
3.8
35
77
16
143
27
14
18
39
1.90
60853--60894
15
2.7
15
92
3
66
64
14
9
11
1.50

Tables:   1

The End!