Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013597.1 Corchorus olitorius cultivar O-4 contig13630, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3296
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29


Found at i:1919 original size:16 final size:17

Alignment explanation


    Indices: 1887--1919  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1877 GATCAAACGA

                             
       1887 AATAAAATAAAAGATAG
          1 AATAAAATAAAAGATAG

                  *          
       1904 AATAAATTAAAA-ATAG
          1 AATAAAATAAAAGATAG

       1920 TAATTAAAGT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16    4  0.27
  17   11  0.73

ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21


Consensus pattern (17 bp):   
AATAAAATAAAAGATAG
Done.