Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013598.1 Corchorus olitorius cultivar O-4 contig13631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10669
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30


Found at i:9088 original size:22 final size:20

Alignment explanation


    Indices: 9063--9102  Score: 53
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       9053 ATGTATATAC

                                  
       9063 ATGACTAATAGACAAAATGATG
          1 ATGAC-AATA-ACAAAATGATG

                      *       
       9085 ATGACAATAAGAAAATGA
          1 ATGACAATAACAAAATGA

       9103 GTATGCTCAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    8  0.47
  21    4  0.24
  22    5  0.29

ACGTcount: A:0.55, C:0.07, G:0.17, T:0.20


Consensus pattern (20 bp):   
ATGACAATAACAAAATGATG

Found at i:9191 original size:17 final size:17

Alignment explanation


    Indices: 9169--9203  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       9159 GCCTATAATT

                             
       9169 AATTAAACTAATGTGAA
          1 AATTAAACTAATGTGAA

                             
       9186 AATTAAACTAATGTGAA
          1 AATTAAACTAATGTGAA

             
       9203 A
          1 A

       9204 GCATGCATAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.54, C:0.06, G:0.11, T:0.29


Consensus pattern (17 bp):   
AATTAAACTAATGTGAA
Done.