Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001360.1 Corchorus olitorius cultivar O-4 contig01360, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 665

Length: 1109
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37


Found at i:718 original size:14 final size:13

Alignment explanation


    Indices: 687--732  Score: 56
    Period size: 13  Copynumber: 3.3  Consensus size: 13

        677 ATCGGGTTTT

                         
        687 AGTCAGTTTGTTG
          1 AGTCAGTTTGTTG

                     *    
        700 AGTCAGTTTTTTCG
          1 AGTCAGTTTGTT-G

                           
        714 AGTCAGTTAGTGTTG
          1 AGTCAGTT--TGTTG

                
        729 AGTC
          1 AGTC

        733 TGAGTCTGGC


Statistics
Matches: 28,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  13   11  0.39
  14    9  0.32
  15    5  0.18
  16    3  0.11

ACGTcount: A:0.17, C:0.11, G:0.28, T:0.43


Consensus pattern (13 bp):   
AGTCAGTTTGTTG
Done.