Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013605.1 Corchorus olitorius cultivar O-4 contig13638, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1944
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1785 original size:27 final size:27

Alignment explanation


    Indices: 1755--1811  Score: 114
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1745 AAATCACTAC

                                       
       1755 TATAAACTATGGAATATGCAGGTCTAA
          1 TATAAACTATGGAATATGCAGGTCTAA

                                       
       1782 TATAAACTATGGAATATGCAGGTCTAA
          1 TATAAACTATGGAATATGCAGGTCTAA

               
       1809 TAT
          1 TAT

       1812 GGAAAATATT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   30  1.00

ACGTcount: A:0.40, C:0.11, G:0.18, T:0.32


Consensus pattern (27 bp):   
TATAAACTATGGAATATGCAGGTCTAA
Done.