Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013611.1 Corchorus olitorius cultivar O-4 contig13644, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38090

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--65
2
33.0
2
95
3
114
52
47
0
0
1.00
308--447
63
2.2
66
88
3
205
30
18
5
45
1.72
3031--3056
13
2.0
13
100
0
52
38
15
0
46
1.46
3136--3336
91
2.2
92
84
3
255
39
9
10
40
1.73
3189--3518
91
3.6
90
80
6
267
38
6
11
43
1.69
10583--10619
17
2.2
17
90
0
56
13
8
0
78
0.96
23837--23882
24
1.9
24
81
0
56
13
8
19
58
1.60
23859--23889
14
2.1
15
94
5
55
6
6
22
64
1.40
24289--24556
35
7.7
34
82
6
290
40
9
17
32
1.82
24287--24556
104
2.6
104
86
4
348
41
9
17
31
1.82
24283--24556
70
3.9
70
83
2
329
41
9
17
31
1.82
26777--26814
19
2.0
20
85
10
53
47
18
7
26
1.76
35948--35972
6
4.2
6
100
0
50
84
0
16
0
0.63
37492--37530
20
2.0
19
85
5
51
46
5
7
41
1.55

Tables:   1

The End!