genome.fa.s13613.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013613.1 Corchorus olitorius cultivar O-4 contig13646, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45631

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464--586	64	1.9	64	98	0	237	39	21	6	33	1.79
2937--2967	2	15.5	2	100	0	62	48	0	0	51	1.00
7925--8025	37	2.7	38	84	4	134	27	16	16	38	1.91
12488--12523	3	11.7	3	88	5	54	69	0	0	30	0.89
12549--12588	3	13.3	3	100	0	80	67	0	0	32	0.91
25586--25856	131	2.1	130	82	4	323	40	22	11	24	1.87
30155--30578	40	10.6	40	90	0	636	32	18	28	21	1.96
34388--34437	25	2.0	25	96	0	91	38	14	20	28	1.91
34575--34673	26	3.7	26	74	15	76	42	22	15	20	1.89
35100--35170	31	2.3	31	88	9	117	33	21	12	32	1.91
35106--35178	31	2.4	31	90	4	103	32	19	15	32	1.92
37113--37215	52	2.0	52	94	0	179	46	6	10	35	1.65
39135--39177	21	2.0	21	91	8	70	44	25	11	18	1.84
39190--39227	16	2.3	17	86	9	60	15	0	2	81	0.80
42390--42469	36	2.2	36	84	4	99	31	16	13	38	1.87
42362--42542	87	2.1	87	87	5	260	29	17	13	39	1.87
43069--43599	40	13.3	39	83	4	589	37	9	21	31	1.86
43069--44134	120	9.0	119	80	8	1083	37	10	21	31	1.86
43574--43622	23	2.1	23	92	0	80	32	6	24	36	1.80
43534--43662	63	2.0	63	98	0	249	34	8	24	32	1.85
43506--43702	103	1.9	103	90	2	315	36	9	22	31	1.86
43597--44134	40	13.5	40	86	4	678	37	10	21	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44110--44157	23	2.0	24	84	11	64	33	12	20	33	1.90
44144--44306	39	4.2	39	91	0	236	36	9	24	28	1.87
44144--44333	39	4.8	39	89	0	218	37	11	23	27	1.89
44408--44950	141	3.9	140	91	2	858	35	16	20	28	1.94
44408--44950	279	1.9	281	90	2	878	35	16	20	28	1.94

Tables:   1

The End!