Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013615.1 Corchorus olitorius cultivar O-4 contig13648, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36140

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5208--5270
22
2.9
22
88
4
83
39
20
9
30
1.84
17185--17254
29
2.3
30
80
7
88
34
22
10
32
1.88
17732--17795
22
2.9
22
82
13
78
32
7
14
45
1.73
17761--18123
22
16.4
22
71
10
145
38
8
17
36
1.80
17763--17898
66
2.1
65
86
4
184
38
5
16
38
1.73
17872--17925
27
2.0
27
92
0
90
48
5
12
33
1.65
17851--17947
49
2.0
48
87
2
140
41
6
16
36
1.73
17709--18127
44
9.5
43
70
14
169
36
8
17
36
1.81
18168--18284
22
5.5
22
73
12
82
35
12
16
35
1.87
18249--18295
22
2.1
22
88
0
67
34
6
17
42
1.74
18513--18740
22
10.6
21
73
13
144
38
8
16
36
1.79
19102--19136
3
11.7
3
100
0
70
68
0
0
31
0.90
20051--20080
6
5.2
6
92
8
53
16
33
33
16
1.92
20277--21102
437
1.9
435
82
5
1031
43
15
14
26
1.85
21810--21851
21
2.0
21
85
0
57
54
4
11
28
1.57
26961--27136
30
5.7
30
79
7
183
32
16
17
32
1.93
27006--27136
63
2.1
62
84
6
169
32
16
17
33
1.93
27012--27176
30
5.2
32
80
9
155
32
17
16
33
1.93
30415--30441
2
13.5
2
100
0
54
48
0
0
51
1.00
31847--32029
92
2.0
92
85
2
251
50
19
16
13
1.78
33432--33506
29
2.5
30
80
4
89
25
26
16
32
1.96
35472--35518
18
2.6
19
73
10
53
70
0
10
19
1.16

Tables:   1

The End!