Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013616.1 Corchorus olitorius cultivar O-4 contig13649, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25968

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--35
2
18.0
2
94
5
63
48
0
0
51
1.00
1--52
8
6.7
7
85
10
50
42
3
0
53
1.19
188--219
6
5.3
6
100
0
64
34
0
15
50
1.45
301--329
2
15.0
2
92
7
51
51
0
0
48
1.00
299--329
15
2.1
15
100
0
62
51
0
0
48
1.00
303--328
13
2.0
13
100
0
52
53
0
0
46
1.00
1477--2543
44
24.9
45
68
18
414
38
9
16
35
1.81
1473--2543
66
16.6
65
70
15
313
38
9
16
35
1.81
1473--1692
22
10.0
22
70
12
132
35
9
17
38
1.82
1710--2145
22
19.6
22
72
13
250
39
9
16
34
1.81
2169--2280
41
2.8
40
72
10
104
40
8
16
34
1.79
2163--2543
22
17.9
22
69
16
205
39
8
16
35
1.79
2418--2497
23
3.5
23
81
11
94
38
5
16
40
1.70
2243--2702
22
21.1
22
69
12
209
36
9
17
36
1.82
2747--2800
22
2.5
22
84
6
65
46
1
12
38
1.53
3460--3497
16
2.4
16
100
0
76
28
13
5
52
1.61
3796--3862
33
2.0
34
97
2
127
23
7
17
50
1.71
8449--8710
107
2.5
105
91
2
402
39
8
10
41
1.69
9807--9853
2
24.0
2
95
4
87
51
0
0
48
1.00
22380--22418
17
2.3
17
86
0
51
38
0
2
58
1.12
22387--22419
17
1.9
17
93
0
57
39
0
0
60
0.97
24919--25038
60
2.0
61
88
6
181
40
15
11
32
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25242--25269
2
14.0
2
100
0
56
50
0
0
50
1.00
25831--25870
20
2.0
20
90
0
62
25
20
15
40
1.90
25944--25968
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!