Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013617.1 Corchorus olitorius cultivar O-4 contig13650, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28843

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
487--516
13
2.3
13
94
0
51
23
13
0
63
1.29
1937--1980
21
2.1
21
86
0
61
45
4
18
31
1.69
3331--3428
32
3.1
32
62
16
76
41
16
12
29
1.84
3331--3458
64
2.0
63
95
1
229
43
17
10
27
1.83
3503--3554
25
2.0
26
96
3
97
50
0
9
40
1.35
3946--3971
12
2.2
12
100
0
52
34
0
0
65
0.93
7491--7554
14
4.5
14
74
3
65
20
9
9
60
1.54
9748--9778
14
2.2
14
94
0
53
22
6
25
45
1.76
15446--15490
22
2.0
22
91
0
72
33
20
15
31
1.93
20952--21036
42
2.0
41
88
6
127
43
5
1
49
1.34
20944--21057
11
10.8
11
66
11
51
43
6
0
49
1.33
20959--21047
41
2.1
41
83
6
108
46
6
1
46
1.37

Tables:   1

The End!