Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001362.1 Corchorus olitorius cultivar O-4 contig01362, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1286
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35


Found at i:1068 original size:5 final size:5

Alignment explanation


    Indices: 1049--1090  Score: 66
    Period size: 5  Copynumber: 8.0  Consensus size: 5

       1039 GTTGTATGAA

                                                             
       1049 AACAG AACATGG AACAG AACAG AACAG AACAG AACAG AACAG
          1 AACAG AACA--G AACAG AACAG AACAG AACAG AACAG AACAG

       1091 TTAAATTAAA


Statistics
Matches: 35,  Mismatches: 0, Indels: 4
        0.90            0.00        0.10

Matches are distributed among these distances:
   5   30  0.86
   7    5  0.14

ACGTcount: A:0.57, C:0.19, G:0.21, T:0.02


Consensus pattern (5 bp):   
AACAG

Done.