Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013620.1 Corchorus olitorius cultivar O-4 contig13653, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11496
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33


Found at i:4113 original size:13 final size:13

Alignment explanation


    Indices: 4095--4129  Score: 70
    Period size: 13  Copynumber: 2.7  Consensus size: 13

       4085 CAATCCTTTT

                         
       4095 CCTTCTTCAAACC
          1 CCTTCTTCAAACC

                         
       4108 CCTTCTTCAAACC
          1 CCTTCTTCAAACC

                     
       4121 CCTTCTTCA
          1 CCTTCTTCA

       4130 TCATAAACTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   22  1.00

ACGTcount: A:0.20, C:0.46, G:0.00, T:0.34


Consensus pattern (13 bp):   
CCTTCTTCAAACC
Done.