Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013622.1 Corchorus olitorius cultivar O-4 contig13655, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1696
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31


Found at i:463 original size:15 final size:15

Alignment explanation


    Indices: 443--474  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        433 AAACTAAGTG

                           
        443 GAGCTTGTTGATTTT
          1 GAGCTTGTTGATTTT

                           
        458 GAGCTTGTTGATTTT
          1 GAGCTTGTTGATTTT

              
        473 GA
          1 GA

        475 ACCCCCAAGG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50


Consensus pattern (15 bp):   
GAGCTTGTTGATTTT
Done.