Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013625.1 Corchorus olitorius cultivar O-4 contig13658, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78336

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
616--651
2
18.5
2
88
5
56
52
0
2
44
1.15
618--652
17
2.1
17
94
0
61
54
0
2
42
1.15
5591--6146
285
1.9
289
88
2
852
29
19
16
34
1.93
6339--6385
10
4.8
10
89
2
69
31
17
2
48
1.58
6337--6382
14
3.4
14
79
8
51
30
17
2
50
1.58
18029--18278
131
2.0
127
88
6
373
38
10
2
49
1.49
22577--22607
2
15.5
2
100
0
62
51
0
0
48
1.00
24489--24564
25
3.0
25
71
19
77
47
0
2
50
1.15
24522--24553
11
2.9
11
90
0
55
59
0
0
40
0.97
24522--24555
10
3.2
10
91
8
50
55
0
0
44
0.99
31886--31915
15
2.0
15
100
0
60
33
20
6
40
1.78
32671--32721
25
2.0
25
100
0
102
21
27
11
39
1.88
40937--40982
3
15.0
3
82
13
58
63
2
2
32
1.19
43130--43165
13
2.7
13
91
4
54
33
5
19
41
1.75
49080--49255
95
1.9
95
87
2
264
13
34
39
13
1.83
53527--53785
129
2.0
130
96
0
484
28
22
19
28
1.98
62727--62768
15
2.7
15
96
3
75
66
14
7
11
1.43
71247--71280
17
2.0
17
88
11
52
47
23
0
29
1.52
75575--75619
21
2.1
21
83
0
54
33
6
6
53
1.53

Tables:   1

The End!