genome.fa.s13626.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013626.1 Corchorus olitorius cultivar O-4 contig13659, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63538

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2203--2249	16	3.1	15	82	11	53	59	14	10	14	1.61
4118--4143	11	2.4	11	100	0	52	23	38	19	19	1.93
4613--4681	35	1.9	36	82	11	88	50	10	10	28	1.68
7477--7526	26	1.9	26	87	0	73	16	20	10	54	1.70
10018--10089	29	2.6	28	91	4	110	33	27	18	20	1.96
10700--10746	11	4.7	10	80	17	53	40	6	21	31	1.78
10711--10746	19	1.9	18	88	5	54	41	2	22	33	1.68
11306--11337	11	2.9	11	95	0	55	37	0	18	43	1.51
16679--16768	27	3.3	26	89	4	126	38	24	18	17	1.92
17054--17611	59	9.4	59	91	1	857	41	16	15	26	1.88
17054--17611	179	3.1	177	91	1	875	41	16	15	26	1.88
17054--17607	298	1.9	296	90	0	892	40	16	15	26	1.89
17582--17643	28	2.2	28	94	0	106	43	20	16	19	1.88
17523--17698	87	2.0	87	94	0	307	41	18	15	24	1.89
17610--17762	59	2.6	59	93	1	263	41	16	15	26	1.88
17466--17755	146	2.0	146	93	1	501	40	17	15	26	1.89
18103--18207	37	2.9	36	88	5	140	11	24	9	54	1.66
36840--36929	27	3.3	26	89	4	126	37	24	18	18	1.94
40720--40763	16	2.8	16	85	0	61	38	40	13	6	1.71
41057--41085	15	1.9	15	100	0	58	55	6	3	34	1.44
41568--41614	13	3.8	12	78	13	51	40	0	4	55	1.19
42299--42525	105	2.2	105	81	5	253	40	9	11	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42346--42551	105	2.0	104	82	5	254	42	7	12	37	1.71
44011--44068	29	2.0	30	86	3	82	34	22	10	32	1.88
48337--48368	16	2.0	16	93	0	55	31	28	21	18	1.97
50439--50494	18	3.1	18	72	12	51	17	32	5	44	1.72
51112--51151	21	1.9	21	89	0	62	35	20	17	27	1.95
54251--54298	11	4.8	10	78	17	55	41	0	20	37	1.53
54263--54298	19	1.9	19	88	5	56	41	0	22	36	1.54
56117--56232	35	3.4	34	79	13	114	32	5	9	52	1.56
56129--56231	33	3.1	31	76	18	100	28	4	10	56	1.54

Tables:   1

The End!