Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013635.1 Corchorus olitorius cultivar O-4 contig13668, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71111

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--44
2
22.0
2
100
0
88
0
50
0
50
1.00
3887--3938
25
2.1
25
96
0
95
40
9
15
34
1.80
6671--6708
19
2.0
19
89
0
58
44
2
26
26
1.67
8127--8271
43
3.4
43
91
0
227
22
26
15
34
1.95
8265--8594
48
6.8
48
88
5
434
12
22
20
44
1.84
8603--9018
48
8.2
48
71
10
276
12
20
19
46
1.82
8487--8699
116
1.8
116
91
0
354
13
19
20
46
1.82
8648--8878
116
2.0
116
87
1
329
12
19
19
48
1.80
8433--8926
164
3.0
163
90
2
781
12
20
19
47
1.81
8764--9018
48
5.3
48
89
1
386
13
19
19
47
1.82
11108--11151
22
1.9
24
86
9
65
43
11
9
36
1.72
21654--21728
31
2.5
31
82
4
100
37
8
24
30
1.84
23952--23985
2
17.5
2
93
6
61
50
0
0
50
1.00
27748--27842
42
2.3
42
84
0
118
36
16
20
26
1.93
28010--28034
13
1.9
13
100
0
50
56
0
0
44
0.99
28408--28473
19
3.7
19
66
15
59
27
7
25
39
1.83
34692--34718
14
1.9
14
100
0
54
88
11
0
0
0.50
46788--46823
17
2.1
17
100
0
72
33
27
5
33
1.80
50640--50768
35
3.6
35
80
8
145
29
16
15
38
1.89
53648--53691
21
2.1
21
86
0
61
18
20
29
31
1.96
55988--56047
29
2.0
30
87
6
86
35
18
8
38
1.81
57865--57924
21
2.8
21
76
2
66
13
23
45
18
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61464--61498
15
2.2
16
90
5
54
68
11
5
14
1.37
62261--62286
11
2.4
11
100
0
52
69
7
15
7
1.35
62872--62932
29
2.0
30
87
6
88
34
18
8
39
1.80
62901--62933
11
2.8
12
81
9
50
36
18
9
36
1.82

Tables:   1

The End!