Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013638.1 Corchorus olitorius cultivar O-4 contig13671, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6207

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--264
109
2.4
107
84
3
332
31
22
18
27
1.97
233--430
106
1.9
107
88
4
301
36
23
14
25
1.92
1--430
54
8.0
54
80
7
344
33
23
17
26
1.96
344--528
92
2.0
93
90
1
291
34
22
17
24
1.96
1628--1709
40
2.1
39
84
6
103
35
14
13
36
1.86
3565--3654
36
2.5
36
98
0
171
42
11
23
23
1.86
5088--5365
8
35.8
8
66
19
67
64
1
8
25
1.32
5075--5132
24
2.4
24
82
5
73
56
1
17
24
1.50
5172--5365
4
48.8
4
68
18
111
65
0
6
26
1.21
5180--5369
19
9.1
19
70
23
98
65
0
7
26
1.23
5154--5259
27
4.2
26
70
20
82
64
0
7
27
1.27
5154--5365
44
4.7
44
89
2
291
65
0
7
26
1.26
5270--5408
62
2.2
62
87
5
192
66
0
7
25
1.21
5204--5408
106
1.9
106
87
5
299
66
0
6
26
1.20
5237--5409
18
10.3
17
71
23
63
66
0
7
25
1.22

Tables:   1

The End!