Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001364.1 Corchorus olitorius cultivar O-4 contig01364, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1042
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:490 original size:21 final size:21

Alignment explanation


    Indices: 464--513  Score: 66
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        454 AGGGATCGAG

                     *    *       
        464 CTGGGCGCTGA-GCCTTGTCGC
          1 CTGGGCGCTAAGGCATTG-CGC

                                 
        485 CTGGGCGCTAAGGCATTGCGC
          1 CTGGGCGCTAAGGCATTGCGC

                    
        506 CTGGGCGC
          1 CTGGGCGC

        514 CCAGCGGCAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  21   21  0.81
  22    5  0.19

ACGTcount: A:0.08, C:0.32, G:0.40, T:0.20


Consensus pattern (21 bp):   
CTGGGCGCTAAGGCATTGCGC
Done.