Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013643.1 Corchorus olitorius cultivar O-4 contig13676, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35525

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4188--4241
17
3.2
17
72
0
63
59
11
11
18
1.60
4883--4908
5
5.2
5
100
0
52
57
0
0
42
0.98
6306--6331
7
3.7
7
100
0
52
26
0
0
73
0.84
15675--15709
12
2.9
12
91
0
52
34
0
31
34
1.58
30057--30151
31
3.1
31
93
1
156
40
12
13
33
1.83
30571--30633
28
2.2
28
82
2
72
38
4
11
46
1.61
33678--33716
20
2.0
20
85
10
53
28
5
2
64
1.28
33914--34101
22
8.5
21
74
9
133
34
10
19
35
1.86
33914--34864
44
22.2
44
67
18
159
39
9
16
34
1.81
33879--34114
66
3.5
65
80
7
224
36
9
18
36
1.84
34119--34507
22
17.5
21
68
15
85
40
9
15
34
1.81
34281--34534
22
11.5
22
72
10
153
41
10
14
33
1.79
34112--34904
66
12.3
66
68
16
250
40
9
15
34
1.80
34587--35191
22
27.8
22
67
14
132
38
10
15
35
1.81
34804--34904
45
2.3
45
85
1
132
36
7
15
39
1.77
35158--35200
22
2.0
22
90
0
68
41
6
16
34
1.75

Tables:   1

The End!