Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013644.1 Corchorus olitorius cultivar O-4 contig13677, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49131

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3507--3543
13
2.8
14
88
8
51
40
0
2
56
1.13
11235--11264
11
2.7
11
100
0
60
36
20
0
43
1.52
18541--18594
13
3.9
14
72
20
51
44
5
11
38
1.63
18544--18594
14
3.8
13
80
12
50
47
5
9
37
1.61
19211--19247
20
1.9
20
88
5
58
48
2
10
37
1.52
20574--20894
105
3.1
105
86
1
448
19
20
21
38
1.94
21328--22347
35
29.1
35
84
3
1214
15
18
22
43
1.87
27746--27785
20
2.0
20
85
9
55
12
12
12
62
1.55
29364--29412
21
2.3
21
77
19
57
22
6
6
65
1.38
30585--30905
36
9.0
36
82
7
368
38
10
18
32
1.85
42179--42220
2
22.5
2
86
13
63
47
0
0
52
1.00
47358--49131
154
11.5
154
92
0
2861
21
18
19
39
1.92
47358--49131
463
3.8
462
92
1
2914
21
18
19
39
1.92

Tables:   1

The End!