Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013652.1 Corchorus olitorius cultivar O-4 contig13685, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 808

Length: 1347
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28


Found at i:466 original size:15 final size:16

Alignment explanation


    Indices: 445--485  Score: 57
    Period size: 15  Copynumber: 2.6  Consensus size: 16

        435 CAGAGGTTGA

                        *   
        445 TAGAAAACAATTGAAC
          1 TAGAAAACAATTAAAC

                            
        461 -AGAAAACAATTAAAC
          1 TAGAAAACAATTAAAC

               *      
        476 TAGGAAACAA
          1 TAGAAAACAA

        486 AACAAAGTAA


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  15   14  0.64
  16    8  0.36

ACGTcount: A:0.61, C:0.12, G:0.12, T:0.15


Consensus pattern (16 bp):   
TAGAAAACAATTAAAC

Done.