Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013667.1 Corchorus olitorius cultivar O-4 contig13700, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1151
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32


Found at i:267 original size:22 final size:22

Alignment explanation


    Indices: 227--269  Score: 59
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        217 GACTATTGCT

                     * *  *       
        227 CTCCTTGAAGTTGATAATTTCA
          1 CTCCTTGAAATCGACAATTTCA

                                 
        249 CTCCTTGAAATCGACAATTTC
          1 CTCCTTGAAATCGACAATTTC

        270 TTAGTCAAAT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37


Consensus pattern (22 bp):   
CTCCTTGAAATCGACAATTTCA
Done.