Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013675.1 Corchorus olitorius cultivar O-4 contig13708, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8532
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32


Found at i:7946 original size:15 final size:16

Alignment explanation


    Indices: 7920--7949  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       7910 GTATATTTAA

                            
       7920 AAACTAAAATAAATAT
          1 AAACTAAAATAAATAT

                           
       7936 AAACT-AAATAAATA
          1 AAACTAAAATAAATA

       7950 CTTACAAAAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23


Consensus pattern (16 bp):   
AAACTAAAATAAATAT
Done.