Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013676.1 Corchorus olitorius cultivar O-4 contig13709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6294
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:5032 original size:8 final size:8

Alignment explanation


    Indices: 5019--5044  Score: 52
    Period size: 8  Copynumber: 3.2  Consensus size: 8

       5009 TTCTTCAATG

                    
       5019 ATCTTCAA
          1 ATCTTCAA

                    
       5027 ATCTTCAA
          1 ATCTTCAA

                    
       5035 ATCTTCAA
          1 ATCTTCAA

              
       5043 AT
          1 AT

       5045 TATCTTCAAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38


Consensus pattern (8 bp):   
ATCTTCAA
Done.