Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013677.1 Corchorus olitorius cultivar O-4 contig13710, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48132

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--54
2
28.0
2
92
7
94
0
51
0
48
1.00
663--786
64
1.9
64
90
0
194
32
16
19
31
1.94
2675--2708
15
2.3
15
94
0
59
52
8
29
8
1.62
3126--3243
42
2.8
42
85
0
164
48
2
15
33
1.58
4179--4300
64
1.9
64
96
0
226
36
14
17
31
1.90
4347--4406
12
4.9
12
89
2
93
33
13
26
26
1.93
5487--5542
10
5.6
10
95
0
103
32
8
19
39
1.83
5617--5661
20
2.2
20
84
11
56
44
11
15
28
1.81
9535--9585
26
2.0
26
100
0
102
19
15
1
62
1.41
14951--14985
14
2.5
14
90
0
52
74
5
11
8
1.22
15553--15588
19
1.9
18
88
5
54
41
2
22
33
1.68
18997--19072
28
2.7
29
84
10
95
38
10
18
32
1.85
19988--20033
23
1.9
24
86
8
67
2
36
43
17
1.61
24677--24712
19
1.9
19
88
5
56
36
5
5
52
1.48
32451--32476
11
2.4
11
100
0
52
7
15
7
69
1.35
33578--33626
23
2.2
21
86
13
64
36
8
12
42
1.72
33626--33672
24
2.0
24
83
4
60
36
10
12
40
1.78
39140--39165
11
2.4
11
100
0
52
7
15
7
69
1.35
39900--39941
16
2.6
16
82
17
52
19
9
11
59
1.59
40921--40956
19
1.9
18
88
5
54
27
22
8
41
1.82
43180--43249
35
2.1
35
86
7
101
58
12
4
24
1.52
45893--45936
17
2.6
17
85
7
54
22
50
25
2
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45891--45936
23
2.0
23
91
0
74
21
50
26
2
1.60
46708--46754
13
3.8
12
78
13
51
40
0
4
55
1.19
46904--47024
16
7.6
16
75
9
122
38
40
14
6
1.71
46904--47024
32
3.8
32
88
1
163
38
40
14
6
1.71
47621--47691
27
2.6
26
80
12
72
21
22
15
40
1.90

Tables:   1

The End!