Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013690.1 Corchorus olitorius cultivar O-4 contig13723, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56578

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1327--1382
29
1.9
29
86
13
80
21
14
5
58
1.55
14179--14325
38
3.9
37
86
6
172
25
17
33
23
1.96
14179--14325
76
1.9
75
86
6
208
25
17
33
23
1.96
14354--14395
6
7.0
6
94
0
57
26
0
23
50
1.50
14354--14398
12
3.8
12
90
0
72
24
0
26
48
1.51
14354--14398
18
2.5
18
85
0
63
24
0
26
48
1.51
14499--14538
20
1.9
22
90
10
66
35
2
12
50
1.54
15708--15878
52
3.3
52
92
0
288
34
14
23
28
1.93
15916--15967
10
5.2
10
82
15
54
0
19
0
80
0.71
15916--15971
26
2.1
27
90
3
87
0
19
0
80
0.71
15979--16009
2
15.5
2
100
0
62
48
0
0
51
1.00
33819--34106
107
2.7
104
89
3
425
41
7
8
42
1.65
35209--35557
52
6.7
52
88
0
509
34
19
17
28
1.94
36124--36778
326
2.0
326
97
0
1247
35
16
16
31
1.91
39612--39643
2
16.0
2
100
0
64
50
0
0
50
1.00
40103--40159
2
29.0
2
78
3
53
0
61
0
38
0.96
40567--40626
29
2.0
29
83
6
75
21
23
15
40
1.91
50881--50997
11
10.5
11
69
18
55
24
8
0
66
1.19
50894--51089
7
27.7
7
63
21
54
25
8
1
64
1.30
50881--51083
4
53.8
4
65
18
69
25
7
1
65
1.28
50893--51054
19
7.4
19
65
25
72
24
9
0
65
1.26
51030--51155
8
16.1
8
67
14
50
23
11
3
61
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50887--51097
46
4.6
45
90
3
300
25
8
1
65
1.28
51005--51084
27
3.3
27
63
26
68
28
5
2
63
1.28
50887--51089
15
13.6
14
65
23
85
25
7
1
65
1.29
51111--51155
16
2.8
16
90
6
65
22
17
2
57
1.50
55279--55335
21
2.7
21
72
0
60
43
15
31
8
1.78

Tables:   1

The End!