Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013694.1 Corchorus olitorius cultivar O-4 contig13727, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9872
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36


Found at i:2138 original size:30 final size:30

Alignment explanation


    Indices: 2102--2160  Score: 109
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       2092 GAGTGCCTTA

                          *               
       2102 AATGCATGAAAAGCTTCTCCACCTATTGCT
          1 AATGCATGAAAAGCCTCTCCACCTATTGCT

                                         
       2132 AATGCATGAAAAGCCTCTCCACCTATTGC
          1 AATGCATGAAAAGCCTCTCCACCTATTGC

       2161 CAATTGGTCT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27


Consensus pattern (30 bp):   
AATGCATGAAAAGCCTCTCCACCTATTGCT

Found at i:6599 original size:28 final size:28

Alignment explanation


    Indices: 6559--6614  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       6549 TTGTAGTTAA

                                        
       6559 GATTGATGTTTAACAAAGAGGTTTCTGT
          1 GATTGATGTTTAACAAAGAGGTTTCTGT

                                        
       6587 GATTGATGTTTAACAAAGAGGTTTCTGT
          1 GATTGATGTTTAACAAAGAGGTTTCTGT

       6615 TTGAGCATGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.29, C:0.07, G:0.25, T:0.39


Consensus pattern (28 bp):   
GATTGATGTTTAACAAAGAGGTTTCTGT
Done.