Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013695.1 Corchorus olitorius cultivar O-4 contig13728, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3464
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35


Found at i:2955 original size:12 final size:11

Alignment explanation


    Indices: 2923--2952  Score: 60
    Period size: 11  Copynumber: 2.7  Consensus size: 11

       2913 TTCTCCTTTA

                       
       2923 TTTTTTTTGGT
          1 TTTTTTTTGGT

                       
       2934 TTTTTTTTGGT
          1 TTTTTTTTGGT

                    
       2945 TTTTTTTT
          1 TTTTTTTT

       2953 TGGAAATTCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87


Consensus pattern (11 bp):   
TTTTTTTTGGT
Done.