Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013696.1 Corchorus olitorius cultivar O-4 contig13729, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2240
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Found at i:1791 original size:318 final size:318
Alignment explanation
Indices: 1214--1856 Score: 1277
Period size: 318 Copynumber: 2.0 Consensus size: 318
1204 CTCTTCACAT
1214 ATTCTTTGGACTCCTTATTCATTCGAGACCAATAATACCCGCATGATATCAGCTGTTGGTAGAGT
1 ATTCTTTGGACTCCTTATTCATTCGAGACCAATAATACCCGCATGATATCAGCTGTTGGTAGAGT
1279 TTCTTTCTGCCTTGGTGTTCTCCACAATCACCCGAATGGATTTCGACCATGACTTTGGGAGCTTC
66 TTCTTTCTGCCTTGGTGTTCTCCACAATCACCCGAATGGATTTCGACCATGACTTTGGGAGCTTC
1344 TTCAGTGGACAAACATCTCAGAGGTTCTCCAGTGAATCCCTTTCTGAAGAGAATACCATTATCGA
131 TTCAGTGGACAAACATCTCAGAGGTTCTCCAGTGAATCCCTTTCTGAAGAGAATACCATTATCGA
1409 CAACGAATCTTGCTGCAGATCTCCTAAGGGCATATGCCTTCTTTGCGTCCTGCGGTAGGACGTTA
196 CAACGAATCTTGCTGCAGATCTCCTAAGGGCATATGCCTTCTTTGCGTCCTGCGGTAGGACGTTA
1474 TGAATCAAGAAATCCAGGATCGGCTGTCGCCAATCTCCTACAGCATCTAAGGCAAGGC
261 TGAATCAAGAAATCCAGGATCGGCTGTCGCCAATCTCCTACAGCATCTAAGGCAAGGC
*
1532 ATTCTTTGGACTCCTTATTCATTCGAGACCAATAATACCTGCATGATATCAGCTGTTGGTAGAGT
1 ATTCTTTGGACTCCTTATTCATTCGAGACCAATAATACCCGCATGATATCAGCTGTTGGTAGAGT
1597 TTCTTTCTGCCTTGGTGTTCTCCACAATCACCCGAATGGATTTCGACCATGACTTTGGGAGCTTC
66 TTCTTTCTGCCTTGGTGTTCTCCACAATCACCCGAATGGATTTCGACCATGACTTTGGGAGCTTC
1662 TTCAGTGGACAAACATCTCAGAGGTTCTCCAGTGAATCCCTTTCTGAAGAGAATACCATTATCGA
131 TTCAGTGGACAAACATCTCAGAGGTTCTCCAGTGAATCCCTTTCTGAAGAGAATACCATTATCGA
1727 CAACGAATCTTGCTGCAGATCTCCTAAGGGCATATGCCTTCTTTGCGTCCTGCGGTAGGACGTTA
196 CAACGAATCTTGCTGCAGATCTCCTAAGGGCATATGCCTTCTTTGCGTCCTGCGGTAGGACGTTA
1792 TGAATCAAGAAATCCAGGATCGGCTGTCGCCAATCTCCTACAGCATCTAAGGCAAGGC
261 TGAATCAAGAAATCCAGGATCGGCTGTCGCCAATCTCCTACAGCATCTAAGGCAAGGC
1850 ATTCTTT
1 ATTCTTT
1857 CTCTCTGAAC
Statistics
Matches: 324, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
318 324 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (318 bp):
ATTCTTTGGACTCCTTATTCATTCGAGACCAATAATACCCGCATGATATCAGCTGTTGGTAGAGT
TTCTTTCTGCCTTGGTGTTCTCCACAATCACCCGAATGGATTTCGACCATGACTTTGGGAGCTTC
TTCAGTGGACAAACATCTCAGAGGTTCTCCAGTGAATCCCTTTCTGAAGAGAATACCATTATCGA
CAACGAATCTTGCTGCAGATCTCCTAAGGGCATATGCCTTCTTTGCGTCCTGCGGTAGGACGTTA
TGAATCAAGAAATCCAGGATCGGCTGTCGCCAATCTCCTACAGCATCTAAGGCAAGGC
Done.