Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013700.1 Corchorus olitorius cultivar O-4 contig13733, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67006
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Found at i:20912 original size:30 final size:30
Alignment explanation
Indices: 20878--20946 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
20868 ACGCCCGAGG
20878 CTTATCATGGAGGGAATGATGCGCCAAGGA
1 CTTATCATGGAGGGAATGATGCGCCAAGGA
20908 CTTATCATGGAGGGAATGATGCGCCAAGGA
1 CTTATCATGGAGGGAATGATGCGCCAAGGA
20938 CTTATCATG
1 CTTATCATG
20947 AACTTGAAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (30 bp):
CTTATCATGGAGGGAATGATGCGCCAAGGA
Found at i:21016 original size:18 final size:19
Alignment explanation
Indices: 20993--21030 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
20983 GTGTATGAGC
*
20993 TGCATGGAG-GCATGGAGA
1 TGCATGGAGACCATGGAGA
21011 TGCATGGAGACCATGGAGA
1 TGCATGGAGACCATGGAGA
21030 T
1 T
21031 AATGATGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.13, G:0.39, T:0.18
Consensus pattern (19 bp):
TGCATGGAGACCATGGAGA
Found at i:21474 original size:64 final size:64
Alignment explanation
Indices: 21401--21535 Score: 243
Period size: 64 Copynumber: 2.1 Consensus size: 64
21391 AGTCCAATCC
* *
21401 TTGTTTAATTATGCTTTTATTTCCTTTTCATAGTTGGGCTTGGACTAGTTTTTCTGTAGCCCTT
1 TTGTTTAATTATGCTTTTATTTCATTTTCATAGTTGGGCTTGGACTAGTTTTTCCGTAGCCCTT
21465 TTGTTTAATTATGCTTTTATTTCATTTTCATAGTTGGGCTTGGACTAGTTTTTCCGTAGCCCTT
1 TTGTTTAATTATGCTTTTATTTCATTTTCATAGTTGGGCTTGGACTAGTTTTTCCGTAGCCCTT
*
21529 ATGTTTA
1 TTGTTTA
21536 GACGAAAATT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 68 1.00
ACGTcount: A:0.16, C:0.15, G:0.17, T:0.53
Consensus pattern (64 bp):
TTGTTTAATTATGCTTTTATTTCATTTTCATAGTTGGGCTTGGACTAGTTTTTCCGTAGCCCTT
Found at i:21602 original size:15 final size:15
Alignment explanation
Indices: 21582--21611 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
21572 TATATATCTG
21582 TACCGTATTCAAAAT
1 TACCGTATTCAAAAT
21597 TACCGTATTCAAAAT
1 TACCGTATTCAAAAT
21612 CACGTGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (15 bp):
TACCGTATTCAAAAT
Found at i:30030 original size:59 final size:58
Alignment explanation
Indices: 29920--30035 Score: 164
Period size: 59 Copynumber: 2.0 Consensus size: 58
29910 ATTAATCAAA
*
29920 TATCAAGTGACATGGTCTTTATTAGATGCATAAAAAAAGACGTTTTCGGACCGAGGCT
1 TATCAAGTGACATGGTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACCGAGGCT
* *
29978 TATCGAGTGACATGGTTTTTTTATTAGATGTC-T-AAAAAAGACGTTTTAGGACCGAGGC
1 TATCAAGTGACATGG--TCTTTATTAGATG-CATAAAAAAAGACGTTTTAGGACCGAGGC
30036 ATGATGCTAT
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
58 14 0.27
59 24 0.46
60 13 0.25
61 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (58 bp):
TATCAAGTGACATGGTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACCGAGGCT
Found at i:31350 original size:36 final size:36
Alignment explanation
Indices: 31303--31372 Score: 106
Period size: 36 Copynumber: 1.9 Consensus size: 36
31293 TTCAATAACC
*
31303 TTACATCTTTTGTGA-TTTTGGTTATCATATTTCTTA
1 TTACATCTTTTGT-ATTTTTGATTATCATATTTCTTA
*
31339 TTACATTTTTTGTATTTTTGATTATCATATTTCT
1 TTACATCTTTTGTATTTTTGATTATCATATTTCT
31373 CCAAAATCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 1 0.03
36 30 0.97
ACGTcount: A:0.20, C:0.10, G:0.09, T:0.61
Consensus pattern (36 bp):
TTACATCTTTTGTATTTTTGATTATCATATTTCTTA
Found at i:32272 original size:203 final size:202
Alignment explanation
Indices: 31883--32292 Score: 750
Period size: 203 Copynumber: 2.0 Consensus size: 202
31873 GCTTAATAAC
*
31883 TTTATCAATGGTGAATGTTATTAATTTTTTAAGTCTAAGATTACTAACAAAGTTGTAGTGAATAA
1 TTTATCAATGGTGAACGTTATTAATTTTTTAAGTCTAAGATTACTAACAAAGTTGTAGTGAATAA
**
31948 GATACAACACATTTTTATTATATATAAAACTATACCAAAAAAAATTAGTTGAACATTAGTGGTTG
66 GATACAACACATTACTATTATATATAAAACTATACCAAAAAAAATTAGTTGAACATTAGTGGTTG
32013 ATTTATTAAATTAAATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAAGATC
131 ATTTATTAAATTAAATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAAGATC
32078 CGATTTA
196 CGATTTA
*
32085 TTTATCAATGGTGAACGTTGTTAATTTTTTAAGTCTAAGATTACTAACAAAGTTGTAGTGAATAA
1 TTTATCAATGGTGAACGTTATTAATTTTTTAAGTCTAAGATTACTAACAAAGTTGTAGTGAATAA
*
32150 GATACAACACATTACTATTATATATATAGAACTATACC-AAAAAAATTAGTTGAATATTAGTGGT
66 GATACAACACATTACTATTATATATA-A-AACTATACCAAAAAAAATTAGTTGAACATTAGTGGT
32214 TGATTTATTAAATTAAATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAAGA
129 TGATTTATTAAATTAAATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAAGA
32279 TCCGATTTA
194 TCCGATTTA
32288 TTTAT
1 TTTAT
32293 TATTAAGGAA
Statistics
Matches: 201, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
202 87 0.43
203 105 0.52
204 9 0.04
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37
Consensus pattern (202 bp):
TTTATCAATGGTGAACGTTATTAATTTTTTAAGTCTAAGATTACTAACAAAGTTGTAGTGAATAA
GATACAACACATTACTATTATATATAAAACTATACCAAAAAAAATTAGTTGAACATTAGTGGTTG
ATTTATTAAATTAAATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAAGATC
CGATTTA
Found at i:32397 original size:24 final size:23
Alignment explanation
Indices: 32364--32409 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
32354 ACGTTTGCAC
32364 AAATACCTAAGAATTTGAATTAAA
1 AAATACCTAAGAATTT-AATTAAA
*
32388 AAATATCTAAGAATTTAATTAA
1 AAATACCTAAGAATTTAATTAA
32410 TGTAAGTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.33
Consensus pattern (23 bp):
AAATACCTAAGAATTTAATTAAA
Found at i:32454 original size:39 final size:40
Alignment explanation
Indices: 32400--32480 Score: 137
Period size: 39 Copynumber: 2.0 Consensus size: 40
32390 ATATCTAAGA
*
32400 ATTTAATTAATGTAAGTATTTCAGTTATTATA-GTATTAC
1 ATTTAATTAATGTAAGTATTTCAGTTATTATATATATTAC
*
32439 ATTTAATTAATGTAAGTATTTTAGTTATTATATATATTAC
1 ATTTAATTAATGTAAGTATTTCAGTTATTATATATATTAC
32479 AT
1 AT
32481 AGGAATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 31 0.79
40 8 0.21
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.51
Consensus pattern (40 bp):
ATTTAATTAATGTAAGTATTTCAGTTATTATATATATTAC
Found at i:35334 original size:31 final size:31
Alignment explanation
Indices: 35293--35425 Score: 160
Period size: 31 Copynumber: 4.3 Consensus size: 31
35283 GACGTGGCTT
* *
35293 GCCACATGTACCAAAAAGCAACATGTAGCAC
1 GCCACGTGTACCAAAAAGCGACATGTAGCAC
35324 GCCACGTGTACCAAAAAGCGACATG-AGGCAC
1 GCCACGTGTACCAAAAAGCGACATGTA-GCAC
* *
35355 GCCACGTGTACCAAAAAGTGACATGTATCAC
1 GCCACGTGTACCAAAAAGCGACATGTAGCAC
* * * * *
35386 GCCATGTGTACCCAAAAGTGACATGTGGCAT
1 GCCACGTGTACCAAAAAGCGACATGTAGCAC
*
35417 GCCATGTGT
1 GCCACGTGT
35426 TTCAAAAGTG
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
30 1 0.01
31 89 0.98
32 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.23, T:0.17
Consensus pattern (31 bp):
GCCACGTGTACCAAAAAGCGACATGTAGCAC
Found at i:35395 original size:62 final size:62
Alignment explanation
Indices: 35293--35438 Score: 177
Period size: 62 Copynumber: 2.4 Consensus size: 62
35283 GACGTGGCTT
* **
35293 GCCACATGTACCAAAAAGCAACATGTAGCACGCCACGTGTACCAAAAAGCGACATGAGGCAC
1 GCCACGTGTACCAAAAAGTGACATGTAGCACGCCACGTGTACCAAAAAGCGACATGAGGCAC
* * * * * *
35355 GCCACGTGTACCAAAAAGTGACATGTATCACGCCATGTGTACCCAAAAGTGACATGTGGCAT
1 GCCACGTGTACCAAAAAGTGACATGTAGCACGCCACGTGTACCAAAAAGCGACATGAGGCAC
* **
35417 GCCATGTGTTTC-AAAAGTGACA
1 GCCACGTGTACCAAAAAGTGACA
35439 CATGGCATGC
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
61 10 0.14
62 62 0.86
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (62 bp):
GCCACGTGTACCAAAAAGTGACATGTAGCACGCCACGTGTACCAAAAAGCGACATGAGGCAC
Found at i:35434 original size:30 final size:31
Alignment explanation
Indices: 35299--35450 Score: 126
Period size: 31 Copynumber: 4.9 Consensus size: 31
35289 GCTTGCCACA
* ** * * *
35299 TGTACCAAAAAGCAACATGTAGCACGCCACG
1 TGTACCCAAAAGTGACATGTGGCATGCCATG
* * * * *
35330 TGTACCAAAAAGCGACATGAGGCACGCCACG
1 TGTACCCAAAAGTGACATGTGGCATGCCATG
* ** *
35361 TGTACCAAAAAGTGACATGTATCACGCCATG
1 TGTACCCAAAAGTGACATGTGGCATGCCATG
35392 TGTACCCAAAAGTGACATGTGGCATGCCATG
1 TGTACCCAAAAGTGACATGTGGCATGCCATG
** **
35423 TGT-TTCAAAAGTGACACATGGCATGCCA
1 TGTACCCAAAAGTGACATGTGGCATGCCA
35451 CGTGCACAAA
Statistics
Matches: 105, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
30 21 0.20
31 84 0.80
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.18
Consensus pattern (31 bp):
TGTACCCAAAAGTGACATGTGGCATGCCATG
Found at i:37910 original size:50 final size:48
Alignment explanation
Indices: 37852--37981 Score: 167
Period size: 50 Copynumber: 2.7 Consensus size: 48
37842 TTACATTTCC
**
37852 TGCACTTTTTCTCAATTTTTACTACAAAATTGAACT-TTT-ATTTTTACT
1 TGCACTTTTTCTCAATTTTTAAGACAAAATTGAA-TATTTAATTTTTA-T
37900 TGCAACCTTTTTCTCAATTTTTAAGACAAAATTGAATATTTAATTTTTAT
1 TGC-A-CTTTTTCTCAATTTTTAAGACAAAATTGAATATTTAATTTTTAT
* *
37950 TGCACTTTTTATCAATTTTT-GGACAAAATTGA
1 TGCACTTTTTCTCAATTTTTAAGACAAAATTGA
37982 TTGACACGCT
Statistics
Matches: 74, Mismatches: 4, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
47 11 0.15
48 18 0.24
49 3 0.04
50 35 0.47
51 7 0.09
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (48 bp):
TGCACTTTTTCTCAATTTTTAAGACAAAATTGAATATTTAATTTTTAT
Found at i:39961 original size:15 final size:15
Alignment explanation
Indices: 39941--39996 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
39931 AGAAGATGAA
39941 GGCACCAAAATCGAC
1 GGCACCAAAATCGAC
* *
39956 GGCACCGAAGAT-GAT
1 GGCACC-AAAATCGAC
39971 GGCACCAAAATCGAC
1 GGCACCAAAATCGAC
*
39986 GGCACCGAAAT
1 GGCACCAAAAT
39997 TTATGGCACC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.12
15 26 0.76
16 4 0.12
ACGTcount: A:0.38, C:0.29, G:0.25, T:0.09
Consensus pattern (15 bp):
GGCACCAAAATCGAC
Found at i:40006 original size:30 final size:30
Alignment explanation
Indices: 39932--39994 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
39922 TGTCATGGAA
*
39932 GAAGATGAAGGCACCAAAATCGACGGCACC
1 GAAGATGATGGCACCAAAATCGACGGCACC
39962 GAAGATGATGGCACCAAAATCGACGGCACC
1 GAAGATGATGGCACCAAAATCGACGGCACC
39992 GAA
1 GAA
39995 ATTTATGGCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.40, C:0.25, G:0.27, T:0.08
Consensus pattern (30 bp):
GAAGATGATGGCACCAAAATCGACGGCACC
Found at i:43543 original size:50 final size:48
Alignment explanation
Indices: 43485--43614 Score: 158
Period size: 50 Copynumber: 2.7 Consensus size: 48
43475 TTACATTTCC
**
43485 TGCACTTTTTCTCAATTTTTACTACAAAATTGAACT-TTTA-TTTTTACT
1 TGCACTTTTTCTCAATTTTTAAGACAAAATTGAA-TATTTACTTTTTA-T
43533 TGCAACCTTTTTCTCAATTTTTAAGACAAAATTGAATATTTACTTTTTAT
1 TGC-A-CTTTTTCTCAATTTTTAAGACAAAATTGAATATTTACTTTTTAT
* * *
43583 TGCACTTTTTATTAATTTTT-GGACAAAATTGA
1 TGCACTTTTTCTCAATTTTTAAGACAAAATTGA
43615 TTGGCACGCT
Statistics
Matches: 73, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
47 11 0.15
48 17 0.23
49 3 0.04
50 36 0.49
51 6 0.08
ACGTcount: A:0.30, C:0.14, G:0.07, T:0.49
Consensus pattern (48 bp):
TGCACTTTTTCTCAATTTTTAAGACAAAATTGAATATTTACTTTTTAT
Found at i:47462 original size:2 final size:2
Alignment explanation
Indices: 47450--47484 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
47440 AGTAATAGTG
* *
47450 TA TA TA AA TA TA TA TG TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
47485 TAAAATATAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:49765 original size:5 final size:5
Alignment explanation
Indices: 49714--49762 Score: 59
Period size: 5 Copynumber: 10.2 Consensus size: 5
49704 TTTTTTTAAA
*
49714 AAAAG AAATA- AAAAG AAAAG AAAAG AAAAG -AAAG -AAAG AAAAG ATAAG
1 AAAAG AAA-AG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
49762 A
1 A
49763 TAAACTTGTA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
4 9 0.22
5 30 0.75
6 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAAG
Found at i:56238 original size:2 final size:2
Alignment explanation
Indices: 56231--56260 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
56221 TGGTGAATAC
56231 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
56261 TGTTGCGCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:61805 original size:154 final size:154
Alignment explanation
Indices: 61525--67005 Score: 7902
Period size: 154 Copynumber: 35.6 Consensus size: 154
61515 CACAATGCTT
* * *
61525 TTCACAGTGGACTAATCTCACCAAAAGGATTATAGTTAGGCCATTAACAATGGAAAGAAAAGCAC
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * * *
61590 TGTGGTTTACCAAATCGAAGATGATTCAAAACGTCACTATTGGGCCCC-AATAGGCCCAAAATAA
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAA-AGGCCCAAAATAA
* *
61654 CAAGTGTTCTAAATGAGTTAAAAAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
*
61679 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATTAACAATGGAAAGAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * * *
61744 TGTGATTTGCCAAATCGAAGACGATTCAAAACGTCATTAATGGGCCCCGAAAGGCCCAAAATAAT
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
*
61809 AAGTGTTCCAAATGAGCTACAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
* *
61833 TTCACAGTGGACT-ATCTCACCAAAATTATTATAGTTAGGACATAAACAATGGAAAG-AAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * * * *
61896 GGGGGTTTGCCAAATCGAAGATGATTCAAAATGGAACTAATGGGCCCCGAAATGCCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
* *
61961 AACTCTTCCAAATGAGCTAAAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
* *
61985 TTCACAGTGGACTAATCT--CCAAAATCATTATAGTTAGGCCACAAACAATGGAAAGAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * *
62048 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATATGACCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
62113 AAGTGTTCCAAATGAGCTAAAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
* * *
62137 TTCACAGTGGGCTAATCTCACCAAAAGGATTATAGTTACGCCATAAACAATGGAAAGAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * **
62202 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCAGTTAGGCCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
62267 AAGTGTTCCAAATGAGCTAAAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
* *
62291 TTCACAGTGGACTAATCTCACCTAAATGATTATAGTTAGGCCATTAACAATGGAAAGAAAAGC-T
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * * *
62355 TGGTGGTTTGCCAAATCGAAGATGATTCAAAACGTCACCAATGGGCCCC-AATAGGTCCAAAATA
66 T-GAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAA-AGGCCCAAAATA
* * * *
62419 ACAAGTGTCCCAAAAGAGTTCAAAAC
129 ACAAGTGTTCCAAATGAGCTAAAAAC
* *
62445 TTCACTGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAAAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * *
62510 TGAGGTTTGCTAAATCGAAGA-GTATTCAAAACGGAACTAATGGGCCCCGAAAGACCCAAAATAA
66 TGAGGTTTGCCAAATCGAAGACG-ATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAA
*
62574 TAAGTGTTCCAAATGAGCTAAAAAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
* * *
62599 TTCACAGTGGACTAATCTCATCGAAAGGATTATAGTTAGGCCATAAACAAT-GAAA-AAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * ** * *
62662 TGGGGTTTGCCAAATTGAAGACGATTCAAAACGGATTTAATGGGCCCAGAAAGACCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
* *
62727 AAGTGTCCCAAATGAGTTAAAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
* *
62751 TTCACAGTGGACTAATCTCACCTAAATGATTATAGTTAGGCCATAAACAATGGAAAAAAAAAGCA
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGG-AAAGAAAAGCA
* *
62816 TTGAGGTTTGCCAAATCGAAGA-GTATTCAAAACGGAACTAATGGGCCCCGAAAGGGCCAAAATA
65 TTGAGGTTTGCCAAATCGAAGACG-ATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATA
*
62880 ATAAGTGTTCCAAATGAGCTAAAAAC
129 ACAAGTGTTCCAAATGAGCTAAAAAC
* *
62906 TTCACAGTGGACTAATCTCACCAAAAGGATTATAGTTAGGCCATTAACAATGGAAAGAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
*
62971 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCC-AATAGGCCCAAAATAA
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAA-AGGCCCAAAATAA
63035 CAAGTGTTCCAAATGAGCTAAAAAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
*
63060 TTCACAGTGGACTAATCTCACCAAAA-GAATTATAGTTAGGCCATAAAAAATGGAAAGAAAAGCA
1 TTCACAGTGGACTAATCTCACCAAAATG-ATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCA
* * * *
63124 TTGGGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAACGGGCCCCGATAGGCCCAAAGTAA
65 TTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAA
63189 CAAGTGTTCCAAATGAGCTAAAAAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
* * *
63214 TTCACAGTGGGCTAATCTCACCAAAAGGATTATAGTTACGCCATAAACAATGGAAAGAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * **
63279 TGAGGTTTGCCAAATCGAAAACGATTCAAAACGTCACTAACGGGCCCCGTTAGGCCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
63344 AAGTGTTCCAAATGAGCTAAAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
*
63368 TTCACAGTGGACTAATCTCACCAAAAGGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * ** *
63433 TGGGGTTTGACAAATCGAAGAAGATTCAAAACAAAACTAATGGGCCCCTATAA-GCCCAAAATAA
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGA-AAGGCCCAAAATAA
* *
63497 CAAATGTTTCAAATGAGCTAAAAAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
* * *
63522 TTCACACTGGACTAATCTCACCAAAATTATTATAGTTAGGCCATAAACAAT-GAAAAAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * ** * *
63586 TGGGGTTTGCCAAATCGAAGACGATTCAAAACGGATTTAATGGGCCCAGAAAGACCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
* *
63651 AAGTGTCCCAAATGAGTTAAAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
* * *
63675 TTCACAGTGGAGTAATCTCACCTAAATGATTATAGTTAGGCCATAAACAATGGAAAAAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
*
63740 TGAGGTTTGCCAAATCGAAGACGATTCAAAACAG-AACTAATGGGCCCCGAAAGGCCCAGAATAA
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GTAACTAATGGGCCCCGAAAGGCCCAAAATAA
*
63804 CAAGTGTTTCAAATGAGCTAAAAAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
*
63829 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAAT-GAAAAAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * ** * *
63893 TGGGGTCTGCCAAATCGAAGACGATTCAAAACGGATTTAATGGGCCCAGAAAGACCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
* *
63958 AAGTGTCCCAAATGAGTTAAAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
* *
63982 TTCACAGTGGACGTAATCTCACCTAAATGATTATAGTTAGGCCATAAACAATGGAAAAAAAAAGC
1 TTCACAGTGGAC-TAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGG-AAAGAAAAGC
* *
64047 ATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGAAACTAATGGGCCCCGAAAGGCCCAGAATA
64 ATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATA
*
64112 ACAAGTGTTCCAAATGAGCTAAACAC
129 ACAAGTGTTCCAAATGAGCTAAAAAC
* * * * * *
64138 TTCACATTGGACTAATATCACCAAAAGGATAATAGTTAGGCCATTAACAATGGAAAGAAAAGCTT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * ** * *
64203 TGTGGTTTGCCATATCGAAGATGATTCAAAACGTCGCCAATGGGCCCC-AATAGGTCCAAAATAA
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAA-AGGCCCAAAATAA
* * *
64267 CAAGTGTCCCAAAAGAGTTAAAAAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
* * *
64292 TTCACTGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATAGAAAAAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
** * * *
64357 TGAGGTTTGGTAAATCGAAGA-GTATTTAAAACGGAACTAATGGGCCCCGAAAGGGCCAAAATAA
66 TGAGGTTTGCCAAATCGAAGACG-ATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAA
*
64421 TAAGTGTTCCAAATGAGCTAAAAAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
* * * *
64446 TTCACAATGGACTAATCTCACGAAAAGGATTAAAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * *
64511 TGGGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGACCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
*
64576 AAGTCTTCCAAATGAGCTAAAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
* * * *
64600 TTCACAGTGGACTAATCTCACCGAAAGGATTATAGTTAGGCCATAAACAATGAAAAAAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * ** * *
64665 TGGGGTTTGCCAAATTGAAGACGATTCAAAACGGATTTAATGGGCCCAGAAAGACCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
* * *
64730 AAGTCTCCCAAATGAGTTAAAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
* *
64754 TTCACAGTGGACTAATCTCACCTAAATGATTATAGTTAGGCCATAAACAATGGAAAAAAAAAAGC
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGG--AAAGAAAAGC
* *
64819 ATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATA
64 ATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATA
64884 ACAAGTGTTCCAAATGAGCTAAAAAC
129 ACAAGTGTTCCAAATGAGCTAAAAAC
64910 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* *
64975 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
*
65040 AAGTGTTCCAAATGAGCTAAAAAG
131 AAGTGTTCCAAATGAGCTAAAAAC
* * *
65064 TTCACAGTGGACTAATCTCACCAAAATTATTATAGTTACGCCATAAACAATGGAAAGAAAAGCGT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * * *
65129 CGAGGGTTGCCAAGTCGAAAGACGATTCAAAACG-GACTAATGGGCCCCGAAAGGCCTAAAATAA
66 TGAGGTTTGCCAAATCG-AAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAA
65193 CAAGTGTTCCAAATGAGCTAAAAAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
*
65218 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATCGAAAGAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * *
65283 TGAGGTTTGCCAAATCGAAGAAGATTCAATACGTCACTAATGGGCCCCGATAGGCCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
*
65348 AAGTCTTCCAAATGAGCT-AAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
* *
65371 TTCACAGTGGACTAATCTCACCGAAAGGATTATAGTTAGGCCATAAACAAT-G-AA-AAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * ** * *
65433 TGGGGTTTGCCAAATTGAAGACGATTCAAAACGGATTTAATGGGCCCAGAAAGACCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
* *
65498 AAGTGTCCCAAATGAGTTAAAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
* *
65522 TTCACAGTGGACTAATCTCACCTAAATGATTATAGTTAGGCCATAAACAATGGAAAAAAAAAGCA
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGG-AAAGAAAAGCA
*
65587 TTGAGGTTTGCCAAATCGAAGACGATTCAAAACAG-AACTAATGGGCCCCGAAAGGCCC-AAATT
65 TTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GTAACTAATGGGCCCCGAAAGGCCCAAAATA
*
65650 ACAAGTGTTCCAAATGAGCTAAACAC
129 ACAAGTGTTCCAAATGAGCTAAAAAC
* * *
65676 TTCACATTGGACTAAATCTCACCAAAAGGATTATAGTTAGGCCATTAACAATGGAAAGAAAAGCA
1 TTCACAGTGGACT-AATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCA
* * * * *
65741 TTGTGGTTTGCCAAATCGAAGATGATTCAAAATGTCACTAATGGGCCCC-AATAGGTCCAAAATA
65 TTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAA-AGGCCCAAAATA
* * *
65805 ACAACTGTTCCAAATAAGTTAAAAAC
129 ACAAGTGTTCCAAATGAGCTAAAAAC
* * *
65831 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGCAAAAAAAAACAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* *
65896 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAGCTAATGGGCCCCGAAAGGCCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
*
65961 AAGTGTTCCAAATGAGCTAAACAC
131 AAGTGTTCCAAATGAGCTAAAAAC
*
65985 TTCACAGTGGACTAATCTCACCAAAAGGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG-AC
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCA-
* * * * **
66049 TTGTGGTTTGCCAAATCGAAGATGATTCAAAACGTCACTAATGGGCACC-AATAGATCCAAAATA
65 TTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAA-AGGCCCAAAATA
*
66113 ACAAGTGTTCCAAATGAGATAAAAAC
129 ACAAGTGTTCCAAATGAGCTAAAAAC
*
66139 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAAT-GAAA-AAAAACAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* *
66202 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCATTAATGGGCCCCGAAAGGCCCAAAATAAC
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
66267 AAGTGTTCCAAATGAGCTAAAAAC
131 AAGTGTTCCAAATGAGCTAAAAAC
* * * * * *
66291 TTCACAGTGGACAAATCTCACCAAAAGGATTACAGATAGGCCATAAACAATGGAAAAAAAAACAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* *
66356 TGAGGTTTGCCAAATCGAAGAAGATTCAAAACAG-AACTAATGGGCCCCAAAAGGCCCAAAATAA
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GTAACTAATGGGCCCCGAAAGGCCCAAAATAA
*
66420 CAAGTGTTTCAAATGAGCTAAAAAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
* *
66445 TTCACAGTGGACTAATCTCACCAAAATGATTATAGCTAGGCCATAAACAAT-GAAAAAAAAGCAT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * *
66509 TGGGGTTTGCCAAATTGAAGACGATTCAAAACAG-AACTAATGGGCCCAGAAAGACCCAAAATAA
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GTAACTAATGGGCCCCGAAAGGCCCAAAATAA
*
66573 CAAGTGTCCCAAATGAGCTAAAAAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
* * * * *
66598 GTCACAGTGGACTAATCTCACCTAAATGATTATAGTTAGGCCGTAAACAATAGAAAAAAAAAGCA
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAAT-GGAAAGAAAAGCA
* * * *
66663 TTAAGGTTTGCCAAATCCAAGACGATTCAAAACGAAACTAATGGGCCCCGAAAGGCCCAGAATAA
65 TTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAA
*
66728 CAAGTGTTCCAAATGAGCTAAACAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
* * * * *
66753 TTCACATTGGACTAATATCACCAAAAGGATTATAGTTAGGCCATTAACAATGGAAAGAAAAGCTT
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
* * * * *
66818 TGTGGTTTGCCAAATCGAAGATGATTCAAAACGTCACCAATGGGCCCC-AATAGGTCCAAAATAA
66 TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAA-AGGCCCAAAATAA
* * *
66882 CAAGTGTCCCAAAAGAGTTAAAAAC
130 CAAGTGTTCCAAATGAGCTAAAAAC
* *
66907 TTCACTGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAAAAAATGCA
1 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA-GCA
*
66972 TTGAGGTTTGCTAAATCGAAGA-GTATTCAAAACG
65 TTGAGGTTTGCCAAATCGAAGACG-ATTCAAAACG
67006 G
Statistics
Matches: 4805, Mismatches: 462, Indels: 119
0.89 0.09 0.02
Matches are distributed among these distances:
150 77 0.02
151 90 0.02
152 469 0.10
153 520 0.11
154 2901 0.60
155 503 0.10
156 245 0.05
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (154 bp):
TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
TGAGGTTTGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCCGAAAGGCCCAAAATAAC
AAGTGTTCCAAATGAGCTAAAAAC
Done.