Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013702.1 Corchorus olitorius cultivar O-4 contig13735, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1477
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32


Found at i:711 original size:14 final size:14

Alignment explanation


    Indices: 692--720  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        682 TTGGCAAAGG

                          
        692 CTTTCCAATAAGAT
          1 CTTTCCAATAAGAT

                          
        706 CTTTCCAATAAGAT
          1 CTTTCCAATAAGAT

             
        720 C
          1 C

        721 AATTGCCCAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.34, C:0.24, G:0.07, T:0.34


Consensus pattern (14 bp):   
CTTTCCAATAAGAT
Done.