genome.fa.s13703.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013703.1 Corchorus olitorius cultivar O-4 contig13736, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69062

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8885--8913	2	14.5	2	100	0	58	51	0	0	48	1.00
9224--9258	3	11.7	3	100	0	70	68	0	31	0	0.90
10967--11311	179	1.9	179	93	1	593	39	13	7	39	1.74
11764--11833	36	1.9	36	97	0	131	22	8	7	61	1.49
13496--13584	45	2.0	42	85	6	115	35	4	5	53	1.45
16745--16789	23	2.0	22	91	4	72	44	0	37	17	1.49
17355--17402	24	2.0	25	91	4	80	35	4	6	54	1.45
18244--18313	35	2.0	35	94	0	122	55	15	10	18	1.67
18253--18311	18	3.3	18	68	13	59	54	13	11	20	1.70
18587--18624	18	2.1	18	95	0	67	28	13	28	28	1.94
18606--18795	57	3.4	57	81	2	213	25	10	21	42	1.85
18759--18817	22	2.8	21	84	7	66	15	15	25	44	1.85
18666--18929	134	2.0	135	85	3	361	22	12	22	43	1.86
18802--18944	57	2.6	55	78	4	151	22	11	24	41	1.87
18871--19037	93	1.8	90	83	6	219	24	12	22	40	1.89
19055--19116	21	3.1	21	72	9	58	22	19	20	37	1.95
19137--19217	21	4.0	21	77	9	78	19	14	23	41	1.89
19158--19211	18	2.8	20	83	8	67	16	16	25	40	1.89
19179--19341	76	2.2	74	80	9	170	23	11	24	41	1.87
19039--19269	96	2.4	96	93	2	394	22	14	21	41	1.89
19199--19341	76	1.9	77	82	8	184	23	11	25	39	1.88
19365--19423	21	2.8	21	94	0	100	16	11	27	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19385--19599	54	3.9	54	79	3	196	25	11	23	40	1.87
19196--19512	133	2.4	133	89	3	471	23	10	25	40	1.87
19662--19692	15	2.1	15	100	0	62	38	6	12	41	1.69
25425--25541	59	2.0	57	90	3	180	44	14	5	35	1.67
29581--29659	41	1.9	40	80	14	90	50	7	26	15	1.70
30487--30566	4	21.2	4	76	10	71	26	3	1	68	1.13
30487--30565	7	11.1	7	68	26	51	26	3	1	68	1.14
30487--30566	15	5.4	14	75	12	79	26	3	1	68	1.13
30487--30556	27	2.6	27	84	6	90	27	4	1	67	1.18
30486--30654	8	21.6	8	71	17	81	23	10	1	65	1.31
30486--30683	24	8.2	24	74	12	122	23	9	1	66	1.27
30654--30720	33	2.0	33	82	5	82	22	5	0	71	1.07
31964--32038	33	2.3	33	93	2	134	22	22	17	37	1.94
35496--35530	14	2.7	13	91	8	54	51	0	2	45	1.16
35548--35572	2	12.5	2	100	0	50	48	0	0	52	1.00
36076--36118	6	7.3	6	86	5	61	2	2	13	81	0.89
36076--36118	17	2.4	18	88	3	61	2	2	13	81	0.89
36083--36132	23	2.2	23	82	7	57	6	6	16	72	1.25
36824--36855	16	1.9	17	93	6	57	62	6	28	3	1.34
42075--42101	6	4.5	6	100	0	54	18	0	33	48	1.49
43402--43457	21	2.8	20	81	5	69	39	10	19	30	1.86
44014--44713	351	2.0	349	96	1	1285	28	21	16	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45205--45252	24	2.0	24	100	0	96	33	20	12	33	1.90
47582--47635	19	2.6	21	77	19	60	38	18	3	38	1.69
52775--52858	42	2.0	42	95	0	150	33	14	15	36	1.88
60776--61077	61	5.0	61	93	0	491	35	15	13	36	1.86
60912--60957	23	2.0	23	91	4	76	32	13	10	43	1.78
60791--60896	23	5.0	22	71	16	98	34	14	12	38	1.83
60973--61018	23	2.0	23	87	4	67	34	15	6	43	1.72
61040--61084	21	2.1	21	95	0	81	37	13	8	40	1.76
60979--61136	82	1.9	82	89	0	244	35	18	10	34	1.86
63716--63748	2	17.0	2	93	6	59	51	0	0	48	1.00
64733--65211	239	2.0	244	88	7	717	37	15	6	41	1.72

Tables:   1

The End!