Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013708.1 Corchorus olitorius cultivar O-4 contig13741, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45673

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
500--545
21
2.2
21
96
0
83
21
30
19
28
1.98
1593--1622
10
3.0
10
90
0
51
13
0
0
86
0.57
10430--10516
24
3.5
24
66
22
70
28
11
19
40
1.86
10402--10555
52
3.0
52
88
3
238
29
14
20
35
1.92
13405--13458
22
2.4
22
87
9
74
75
0
16
7
1.01
13512--13547
15
2.5
15
90
4
56
38
8
13
38
1.75
16404--16433
16
1.9
15
93
6
51
43
20
0
36
1.52
17173--17555
54
7.1
54
82
1
457
28
15
21
34
1.94
17173--17555
107
3.6
108
87
3
497
28
15
21
34
1.94
18224--18309
28
3.1
27
83
5
109
17
18
27
36
1.94
19404--19486
40
2.1
40
90
0
130
33
19
26
20
1.96
37036--37139
24
3.7
28
71
19
83
29
9
22
38
1.86
37032--37142
56
2.0
54
86
13
156
29
9
21
38
1.86
37089--37165
33
2.4
33
84
6
95
23
7
24
44
1.80
37112--37216
33
3.2
32
80
11
97
25
6
23
43
1.78
40517--40714
35
5.7
35
92
0
315
28
19
21
30
1.97
40708--40971
90
3.0
89
89
2
386
26
18
26
28
1.98
41269--41363
28
3.4
27
91
4
145
13
18
28
38
1.89
42450--42532
40
2.1
40
88
0
121
34
19
25
20
1.96

Tables:   1

The End!