Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013714.1 Corchorus olitorius cultivar O-4 contig13747, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31370

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
992--1044
27
2.0
25
82
17
63
45
3
9
41
1.54
3124--3172
24
1.9
25
88
12
73
69
0
30
0
0.89
6045--6439
163
2.4
161
85
7
519
28
19
18
32
1.96
11393--11419
13
2.1
13
100
0
54
44
11
0
44
1.39
13521--13649
27
4.8
27
87
0
177
18
39
18
23
1.92
14431--14465
17
2.1
17
94
0
61
20
8
17
54
1.68
15593--15645
6
8.8
6
89
0
79
15
13
52
18
1.74
16014--16116
32
3.2
32
95
0
179
33
23
19
24
1.97
17674--17727
20
2.7
20
85
0
72
35
9
14
40
1.78
17742--17923
71
2.6
71
80
8
201
36
12
8
43
1.72
21619--21716
24
4.1
24
83
0
124
11
14
22
52
1.73
22523--22558
15
2.4
15
95
0
63
52
22
22
2
1.59
24251--24289
14
2.9
13
80
3
51
41
2
2
53
1.28
24305--24474
84
2.0
85
95
2
306
41
9
1
47
1.46
27496--27529
17
2.0
17
100
0
68
17
17
29
35
1.93
27572--27671
32
3.2
32
63
34
81
30
22
28
20
1.98
27554--27679
62
2.0
62
100
0
252
29
22
27
20
1.98
27668--27717
25
2.0
25
100
0
100
32
20
32
16
1.94

Tables:   1

The End!