Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013715.1 Corchorus olitorius cultivar O-4 contig13748, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33445

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3974--4016
22
2.0
22
95
0
77
58
16
9
16
1.63
5474--5522
22
2.3
22
78
3
55
48
16
14
20
1.80
9819--9899
41
2.1
35
73
26
92
38
11
13
37
1.80
9927--10005
27
2.9
27
92
0
131
44
11
5
39
1.62
11753--11795
2
21.5
2
100
0
86
48
0
0
51
1.00
15756--15796
13
3.2
13
83
13
57
31
12
36
19
1.89
24133--24453
178
1.8
178
88
2
493
36
15
13
34
1.87
25537--25581
21
2.1
21
100
0
90
26
20
24
28
1.99
29235--29279
13
3.2
15
75
18
51
26
13
4
55
1.57
32260--32308
20
2.3
21
75
10
55
71
8
8
12
1.31
32744--33026
41
6.9
41
85
3
363
28
13
19
37
1.90
33122--33156
16
2.2
16
100
0
70
11
25
17
45
1.81

Tables:   1

The End!