Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013716.1 Corchorus olitorius cultivar O-4 contig13749, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7200

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1638--1920
41
6.9
41
83
5
329
28
13
19
38
1.90
2016--2048
14
2.2
16
89
10
52
12
21
18
48
1.80
2772--2914
71
2.0
74
88
4
220
16
23
11
48
1.78
4710--4931
41
5.3
41
89
3
329
28
12
18
39
1.88
5027--5061
16
2.2
16
100
0
70
11
25
17
45
1.81
6250--6439
4
49.0
4
67
19
82
25
7
1
64
1.29
6243--6379
11
12.3
11
71
17
86
27
8
0
64
1.22
6243--6454
44
4.8
44
84
6
263
26
7
1
64
1.28
6435--6472
3
12.7
3
100
0
76
31
0
0
68
0.90
6460--6539
24
3.5
22
75
15
65
27
13
2
56
1.51
6527--6613
44
2.0
42
82
12
106
24
10
1
64
1.32

Tables:   1

The End!