Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013721.1 Corchorus olitorius cultivar O-4 contig13754, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 157876
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Found at i:610 original size:332 final size:331
Alignment explanation
Indices: 5--1839 Score: 3053
Period size: 332 Copynumber: 5.5 Consensus size: 331
1 CCGG
*** *
5 AATATTTTTCTTTGATTTTTGGCAAAAATACTCATAGTGATTATATAATTCAGTACCTAAAACAT
1 AATATTTTTCTTTGATTTTTGGCAAAAATACTCATAAAAATTATATAATTCAGTACCTAAAAGAT
* *
70 TGGAGGGCTATTCACGGTTCTAATATCATTTTCCCTA-TTTTTTCAGAACTAATTTCTAATTAAA
66 TGGAGGGCTTTTCACGGTTCTAATATCATTTTCCCTATTTTTTTCAGAATTAATTTCTAATTAAA
** * * *
134 TCGAAATGAATTTCAGATGCTCGTAAAAACATATCCCTTAGTCCAACGTGCCTGAGATTTGATTA
131 TCGAAACCAGTTTCAGATGCTCGTAAAAACATATCCCTTAGTCCAACGTGGCTGGGATTTGATTA
* * *** *
199 GATAAATACAGATATTTCAAGGAGTGTCATCGCCAAAAATCATGCAAAATAGAGTCGGACCCTGG
196 GATAAATATAGATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAATTGAGTCGGACCC-GG
* *
264 AACGTGGTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAATT
260 AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAATT
329 GACCCGA
325 GACCCGA
*
336 AATATTTTTCTTTAATTTTTGGCAAAAATACTCATAAAAATTATATAATTCAGTACCTAAAAGAT
1 AATATTTTTCTTTGATTTTTGGCAAAAATACTCATAAAAATTATATAATTCAGTACCTAAAAGAT
* *
401 TGGAGGGCTTTTCACGGTTCTATTTTCATTTTCCCTATTTTTTTCAGAATTAATTTCTAATTAAA
66 TGGAGGGCTTTTCACGGTTCTAATATCATTTTCCCTATTTTTTTCAGAATTAATTTCTAATTAAA
*
466 TCGAAACCAGTTTCAGATGCACGTAAAAACATATCCCTTAGTCCAACGTGGCTGGGATTTGATTA
131 TCGAAACCAGTTTCAGATGCTCGTAAAAACATATCCCTTAGTCCAACGTGGCTGGGATTTGATTA
* **
531 GATAAATATAGATATTTCAAGGAGTCTCGGAGTCAAAAATCATGCAAAATTGAGTCGGACACCAT
196 GATAAATATAGATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAATTGAGTCGGAC-CCGG
* **
596 AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTATACGATTTCAGCTAAAATAATGCAAAAATT
260 AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAATT
661 GACCCGA
325 GACCCGA
*
668 AATATTTTTCTTTGATTTTTGGCAAAAATACTCAAAAAAATTATATAATTCAGTACCTAAAAGAT
1 AATATTTTTCTTTGATTTTTGGCAAAAATACTCATAAAAATTATATAATTCAGTACCTAAAAGAT
733 TGGAGGGCTTTTCACGGTTCTAATATCATTTTCCCTATTTTTTTCAGAATTAATTTCTAATTAAA
66 TGGAGGGCTTTTCACGGTTCTAATATCATTTTCCCTATTTTTTTCAGAATTAATTTCTAATTAAA
*
798 TCGAAACCAGTTTCAGATGCTCGTAAAAACATATCCCTTAGTCCAACGTGGCTGGGACTTGATTA
131 TCGAAACCAGTTTCAGATGCTCGTAAAAACATATCCCTTAGTCCAACGTGGCTGGGATTTGATTA
863 GATAAATATAGATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAATTGAGTCGGATCCCGG
196 GATAAATATAGATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAATTGAGTCGGA-CCCGG
*
928 AACGCGTTTTTAGCCAAAAACTGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAATT
260 AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAATT
993 GACCCGA
325 GACCCGA
* * *
1000 GATATTTTTCTTTGATTTTTGGCAAAAATACTCATAAAAATTATATAATTCAATACCCAAAAGAT
1 AATATTTTTCTTTGATTTTTGGCAAAAATACTCATAAAAATTATATAATTCAGTACCTAAAAGAT
* * *
1065 TGGAGGGCTTTTCACGATTTTTAATATCATTTTTCCTA-TTTTTTCAGAATTAATTTCTAATTAA
66 TGGAGGGCTTTTCACG-GTTCTAATATCATTTTCCCTATTTTTTTCAGAATTAATTTCTAATTAA
* * * * *
1129 ATCGAAACGAATTTCAGATGCTCGTAAAAACATATCCCTTAATCCAACGTTGCTGAGATTTGATT
130 ATCGAAACCAGTTTCAGATGCTCGTAAAAACATATCCCTTAGTCCAACGTGGCTGGGATTTGATT
*** *
1194 AGATAAATATAGATATTTCAAGGAGTCTCATCGCCAAAAATCATGCAAAATTGAGTCAGACCCCG
195 AGATAAATATAGATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAATTGAGTCGGA-CCCG
*
1259 GAACGCGGTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAAT
259 GAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAAT
1324 TGACCCGA
324 TGACCCGA
* * * *
1332 ATTATTTTTCTTTAATTTTTGGCAAAAATACTCATAAAAATTATATAATTCAATACCCAAAAGAT
1 AATATTTTTCTTTGATTTTTGGCAAAAATACTCATAAAAATTATATAATTCAGTACCTAAAAGAT
*
1397 TGGAGGGCTTTTCACGTTTCTAATATCATTTTCCCTATTTTTTTCAGAATTAATTTCTAATTAAA
66 TGGAGGGCTTTTCACGGTTCTAATATCATTTTCCCTATTTTTTTCAGAATTAATTTCTAATTAAA
* * * * *
1462 TCGATACCAGTTTCAGATGCTCGTAAAGATATATCCCTTAGTCCAACGTGGGTGGGACTTGATTA
131 TCGAAACCAGTTTCAGATGCTCGTAAAAACATATCCCTTAGTCCAACGTGGCTGGGATTTGATTA
* *
1527 GATAAATATAGATATTTCAAGGAGTCTCGGTGCCAAAAATCATGTAAAATTGAGTCGGATCCCGG
196 GATAAATATAGATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAATTGAGTCGGA-CCCGG
1592 AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAATT
260 AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAATT
1657 GACCCGA
325 GACCCGA
1664 AATATTTTTCTTTGATTTTTGGCAAAAATACTCATAAAAATTATATAATTCAGTACCTAAAAGAT
1 AATATTTTTCTTTGATTTTTGGCAAAAATACTCATAAAAATTATATAATTCAGTACCTAAAAGAT
*
1729 TGGAGGGCTTTTCACGGTTCTAATATCATTTTCCCTATTTTTTTCAGAATTATTTTCTAATTAAA
66 TGGAGGGCTTTTCACGGTTCTAATATCATTTTCCCTATTTTTTTCAGAATTAATTTCTAATTAAA
1794 TCGAAACCAGTTTCAGATGCTCGTAAAAACATATCCCTTAGTCCAA
131 TCGAAACCAGTTTCAGATGCTCGTAAAAACATATCCCTTAGTCCAA
1840 TATTGATCTG
Statistics
Matches: 1406, Mismatches: 93, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
331 113 0.08
332 1272 0.90
333 21 0.01
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (331 bp):
AATATTTTTCTTTGATTTTTGGCAAAAATACTCATAAAAATTATATAATTCAGTACCTAAAAGAT
TGGAGGGCTTTTCACGGTTCTAATATCATTTTCCCTATTTTTTTCAGAATTAATTTCTAATTAAA
TCGAAACCAGTTTCAGATGCTCGTAAAAACATATCCCTTAGTCCAACGTGGCTGGGATTTGATTA
GATAAATATAGATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAATTGAGTCGGACCCGGA
ACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAATTG
ACCCGA
Found at i:3332 original size:19 final size:19
Alignment explanation
Indices: 3308--3345 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
3298 GTAAAATATC
3308 CAAAATTGAAGTTCAGGGA
1 CAAAATTGAAGTTCAGGGA
3327 CAAAATTGAAGTTCAGGGA
1 CAAAATTGAAGTTCAGGGA
3346 ATTAAGTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (19 bp):
CAAAATTGAAGTTCAGGGA
Found at i:4044 original size:18 final size:18
Alignment explanation
Indices: 4021--4056 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
4011 GTTGATAACC
4021 GCGAGGGACGTTGCGTTG
1 GCGAGGGACGTTGCGTTG
*
4039 GCGAGGGATGTTGCGTTG
1 GCGAGGGACGTTGCGTTG
4057 CCACTGAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.14, G:0.50, T:0.25
Consensus pattern (18 bp):
GCGAGGGACGTTGCGTTG
Found at i:14690 original size:17 final size:19
Alignment explanation
Indices: 14670--14706 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
14660 AATGTGCGGG
14670 AAAAGAAAA-GAAA-AAAA
1 AAAAGAAAAGGAAAGAAAA
14687 AAAAGAAAAGGAAAGAAAA
1 AAAAGAAAAGGAAAGAAAA
14706 A
1 A
14707 CCGCTAACCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 4 0.22
19 5 0.28
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (19 bp):
AAAAGAAAAGGAAAGAAAA
Found at i:21627 original size:16 final size:16
Alignment explanation
Indices: 21606--21637 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
21596 AGCATCTCTA
21606 AATTATTGAAAAAAAT
1 AATTATTGAAAAAAAT
21622 AATTATTGAAAAAAAT
1 AATTATTGAAAAAAAT
21638 GAAAGCGATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (16 bp):
AATTATTGAAAAAAAT
Found at i:34199 original size:17 final size:16
Alignment explanation
Indices: 34159--34209 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 16
34149 CATGTAATCT
*
34159 TTGATCACCGGTGATC
1 TTGATCACTGGTGATC
34175 TTGCATCACTGGTGATC
1 TTG-ATCACTGGTGATC
*
34192 TTAGATCACTAGTGATC
1 TT-GATCACTGGTGATC
34209 T
1 T
34210 GGGGGTGATC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
16 3 0.10
17 27 0.87
18 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (16 bp):
TTGATCACTGGTGATC
Found at i:40277 original size:14 final size:14
Alignment explanation
Indices: 40258--40286 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
40248 TGGTGGGTGA
40258 GTCTCCCAACAGGG
1 GTCTCCCAACAGGG
40272 GTCTCCCAACAGGG
1 GTCTCCCAACAGGG
40286 G
1 G
40287 CAGCTGCGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.34, G:0.31, T:0.14
Consensus pattern (14 bp):
GTCTCCCAACAGGG
Found at i:45755 original size:21 final size:21
Alignment explanation
Indices: 45710--45768 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
45700 CTGTTTGGCA
* *
45710 ACTGTACGGATGAGATTA--C
1 ACTGTACAGATGAGATTATGT
*
45729 ACTGTACAGATTAGATTATGT
1 ACTGTACAGATGAGATTATGT
45750 ACTGTACAGATGAGATTAT
1 ACTGTACAGATGAGATTAT
45769 TAGAGCAGCG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 16 0.47
21 18 0.53
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTGTACAGATGAGATTATGT
Found at i:62822 original size:21 final size:21
Alignment explanation
Indices: 62796--62847 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
62786 AATTATATAG
62796 ATTAGATTATACATTGTACAT
1 ATTAGATTATACATTGTACAT
**
62817 ATTAGATTATGTATTGTACAT
1 ATTAGATTATACATTGTACAT
*
62838 ATGAGATTAT
1 ATTAGATTAT
62848 CAAAGCAGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.44
Consensus pattern (21 bp):
ATTAGATTATACATTGTACAT
Found at i:67060 original size:126 final size:126
Alignment explanation
Indices: 66835--67152 Score: 483
Period size: 126 Copynumber: 2.5 Consensus size: 126
66825 AGTATCCTTA
* * * *
66835 AATTGAGATTAATTCCTTTCCATGATTGATCTTGTGTTCTCGTCCTTATAAGATAAAAACCGCTT
1 AATTGAGATTAATTCCTTTCCATGATCGATTTTGTGTTCTCGTCCTAACAAGATAAAAACCGCTT
* *
66900 ACCATCTTAATCAATTATATAGTCGTATTAGTTGCTTTGATTCAAAGATTAAAGTTGCCTG
66 ACCATCTTAATCAATTAAATAGTCGTATTAGTTGCTTTGATTCAAAGATTAAAATTGCCTG
* * * *
66961 AATTGAGATTAATTCCTTTCCATGATCGATTTTGTATTCTCGTCCTAACGAGGTAAAAATCGCTT
1 AATTGAGATTAATTCCTTTCCATGATCGATTTTGTGTTCTCGTCCTAACAAGATAAAAACCGCTT
67026 ACCATCTTAATCAATTAAATAGTCGTATTAGTTGCTTTGATTCAAAGATTAAAATTGCCTG
66 ACCATCTTAATCAATTAAATAGTCGTATTAGTTGCTTTGATTCAAAGATTAAAATTGCCTG
* ** * * * *
67087 GATTGAGATTAATTCCTTTTTATGATCGATTTTGTGTTCTCGTCCTTATAAGGTACAAACCGCTT
1 AATTGAGATTAATTCCTTTCCATGATCGATTTTGTGTTCTCGTCCTAACAAGATAAAAACCGCTT
67152 A
66 A
67153 ATAGTCTTAT
Statistics
Matches: 173, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
126 173 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.40
Consensus pattern (126 bp):
AATTGAGATTAATTCCTTTCCATGATCGATTTTGTGTTCTCGTCCTAACAAGATAAAAACCGCTT
ACCATCTTAATCAATTAAATAGTCGTATTAGTTGCTTTGATTCAAAGATTAAAATTGCCTG
Found at i:69648 original size:191 final size:190
Alignment explanation
Indices: 69318--69716 Score: 493
Period size: 191 Copynumber: 2.1 Consensus size: 190
69308 TTGAAAAACA
**
69318 GGATTATGCTAGCAAGTTTTTTCCATTACTAATCTTTCGGTATCCGGAAACTACATTGGGTCTCG
1 GGATTATGCTAGCAAGTTTTTTCCATTACTAATCTTTCGGTATCCGGAAACTACATTAAGTCTCG
* ** * * ** ** *
69383 ATTGATCCGGAATCGAGTCACATCGGACCCATGTAGGAGAAGTTTTCTTGTCACATATTTTTGTC
66 ATTGATCAGGAATCGAACCACATCAGACCCATATAGGAGAAACTTTCCCGCCACATATTTTTGTC
*
69448 ATCCACAAACCTTTAGTTAAG-GGGTATTGAACTCCTTCCATTCAACCCAGTATGTGTTAAT
131 ATCCACAAACC-TTAGTTAAGAGGG-ATTGAACTCCTTCCATTCAACCCAGCATGTGTTAAT
* *
69509 GGATTATGCTAGCAAGATTTTTT-CATTACTAATCTTTCGGTATCCGGTAACTACATTTAATTC-
1 GGATTATGCTAGCAAG-TTTTTTCCATTACTAATCTTTCGGTATCCGGAAACTACA-TTAAGTCT
* * *
69572 CGATTGGTCTAGG-ATCGAACCACATCAGACCCATATAGG-GAAAACTTTCCCGCCATATGTTTT
64 CGATTGATC-AGGAATCGAACCACATCAGACCCATATAGGAG-AAACTTTCCCGCCACATATTTT
* * *
69635 TGTCATTCACAAACCTTAGTTGAGAGGGATTGAGCTCCTTCCATTCAACCCAGCATGTGTTAAT
127 TGTCATCCACAAACCTTAGTTAAGAGGGATTGAACTCCTTCCATTCAACCCAGCATGTGTTAAT
* * *
69699 GAATTATACTAACAAGTT
1 GGATTATGCTAGCAAGTT
69717 GATAAAGCTT
Statistics
Matches: 179, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
189 2 0.01
190 56 0.31
191 109 0.61
192 12 0.07
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (190 bp):
GGATTATGCTAGCAAGTTTTTTCCATTACTAATCTTTCGGTATCCGGAAACTACATTAAGTCTCG
ATTGATCAGGAATCGAACCACATCAGACCCATATAGGAGAAACTTTCCCGCCACATATTTTTGTC
ATCCACAAACCTTAGTTAAGAGGGATTGAACTCCTTCCATTCAACCCAGCATGTGTTAAT
Found at i:79616 original size:36 final size:36
Alignment explanation
Indices: 79568--79640 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
79558 ACACCTTGAT
*
79568 AGAAAAAACATAAGGAAGTTCAGTTTCAGAAAGCCC
1 AGAAAAAACATAAGGAAGTTCAGTTCCAGAAAGCCC
*
79604 AGAAAAACCATAAGGAAGTTCAGTTCCAGAAAGCCC
1 AGAAAAAACATAAGGAAGTTCAGTTCCAGAAAGCCC
79640 A
1 A
79641 ATATCAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.47, C:0.19, G:0.19, T:0.15
Consensus pattern (36 bp):
AGAAAAAACATAAGGAAGTTCAGTTCCAGAAAGCCC
Found at i:80170 original size:2 final size:2
Alignment explanation
Indices: 80130--80160 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
80120 ATCATGAATT
80130 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80161 GAGCATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:82470 original size:21 final size:21
Alignment explanation
Indices: 82432--82471 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
82422 ATATCTACGT
** *
82432 AAAACAGAGACTAGAAACAGA
1 AAAACAGAGAAAACAAACAGA
82453 AAAACAGAGAAAACAAACA
1 AAAACAGAGAAAACAAACA
82472 ATGAAATTGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.68, C:0.15, G:0.15, T:0.03
Consensus pattern (21 bp):
AAAACAGAGAAAACAAACAGA
Found at i:84017 original size:19 final size:19
Alignment explanation
Indices: 83990--84026 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
83980 CTGTTTAGCA
*
83990 ACTGTACAGATGAGATTAC
1 ACTGAACAGATGAGATTAC
*
84009 ACTGAACAGATTAGATTA
1 ACTGAACAGATGAGATTA
84027 GGTACTGTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.27
Consensus pattern (19 bp):
ACTGAACAGATGAGATTAC
Found at i:102156 original size:30 final size:31
Alignment explanation
Indices: 102117--102176 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
102107 CACCATTGTA
*
102117 TTTTATTG-AAGTATTCATTACAACTATTTT
1 TTTTATTGAAAATATTCATTACAACTATTTT
*
102147 TTTTTTTGAAAAATATTCATTACAACTATT
1 TTTTATTG-AAAATATTCATTACAACTATT
102177 GACTCTAGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 7 0.27
32 19 0.73
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.52
Consensus pattern (31 bp):
TTTTATTGAAAATATTCATTACAACTATTTT
Found at i:115937 original size:24 final size:23
Alignment explanation
Indices: 115885--115940 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 23
115875 CAGAATTTCT
115885 TCCTCCTCCCGTTCATCCAGCAC
1 TCCTCCTCCCGTTCATCCAGCAC
*
115908 TACCTCCTCCCGTTCATCCAGCTCC
1 T-CCTCCTCCCGTTCATCCAGC-AC
115933 TCCTCCTC
1 TCCTCCTC
115941 GTCCGGCCGG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 1 0.03
24 27 0.90
25 2 0.07
ACGTcount: A:0.11, C:0.54, G:0.07, T:0.29
Consensus pattern (23 bp):
TCCTCCTCCCGTTCATCCAGCAC
Found at i:116067 original size:28 final size:28
Alignment explanation
Indices: 116027--116080 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
116017 AGCTACTACT
116027 TTTTAGTTTACGCCTTTGACTTTGAGTA
1 TTTTAGTTTACGCCTTTGACTTTGAGTA
116055 TTTTAGTTTACGCCTTTGACTTTGAG
1 TTTTAGTTTACGCCTTTGACTTTGAG
116081 AAAAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.17, C:0.15, G:0.19, T:0.50
Consensus pattern (28 bp):
TTTTAGTTTACGCCTTTGACTTTGAGTA
Found at i:116241 original size:80 final size:80
Alignment explanation
Indices: 116108--116270 Score: 326
Period size: 80 Copynumber: 2.0 Consensus size: 80
116098 GAAAACCGAA
116108 TCGTCGATTAGCAACTGCCACACGTGTTGCCAGTTAGCACGTGCTTTTTCCAATTCCTAATTCCT
1 TCGTCGATTAGCAACTGCCACACGTGTTGCCAGTTAGCACGTGCTTTTTCCAATTCCTAATTCCT
116173 TTGTATTTTTGTATT
66 TTGTATTTTTGTATT
116188 TCGTCGATTAGCAACTGCCACACGTGTTGCCAGTTAGCACGTGCTTTTTCCAATTCCTAATTCCT
1 TCGTCGATTAGCAACTGCCACACGTGTTGCCAGTTAGCACGTGCTTTTTCCAATTCCTAATTCCT
116253 TTGTATTTTTGTATT
66 TTGTATTTTTGTATT
116268 TCG
1 TCG
116271 CTGTTATAAT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 83 1.00
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.41
Consensus pattern (80 bp):
TCGTCGATTAGCAACTGCCACACGTGTTGCCAGTTAGCACGTGCTTTTTCCAATTCCTAATTCCT
TTGTATTTTTGTATT
Found at i:122564 original size:28 final size:28
Alignment explanation
Indices: 122509--122564 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
122499 AAGCTTATTA
* *
122509 TACTATAGATTAGTGTTCATTCCTTAAT
1 TACTATAGATTAGTGTTAATTCCATAAT
*
122537 TACTATAGATTAGTGTTAATTTCATAAT
1 TACTATAGATTAGTGTTAATTCCATAAT
122565 AAACGATGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (28 bp):
TACTATAGATTAGTGTTAATTCCATAAT
Found at i:123352 original size:132 final size:132
Alignment explanation
Indices: 123163--123665 Score: 810
Period size: 132 Copynumber: 3.8 Consensus size: 132
123153 AGGTTTGAAT
* * * *
123163 CCTCTCCAAGCTCCTCCACTATCTGAGCCTATCGGAACCGGAGTTTTCTTTCCGAACTATGCTCC
1 CCTCACCAAGCTCCTCCACAATCTGAGCCTATCGGAACCGGAGTTTTCATGCCGAACTATGCTCC
*
123228 TCCTCTCTCTCCGGCATCAGGCGCTGCAATAGGAGCCGCTGTTTACGGTGGAGCTTCTAGTTCGG
66 TCCTCTCTCTCCGGCATCAGCCGCTGCAATAGGAGCCGCTGTTTACGGTGGAGCTTCTAGTTCGG
123293 CA
131 CA
* * * *
123295 CCTGACCAAGCTCCTCCACAATCTGAGCCTATCGGAACCGGAGTTTTCTTTCCGAACTATGATCC
1 CCTCACCAAGCTCCTCCACAATCTGAGCCTATCGGAACCGGAGTTTTCATGCCGAACTATGCTCC
* * *
123360 TCCTCTCTCTCCAGCATCAGGCGCTGCAATAGGAGACGCTGTTTACGGTGGAGCTTCTAGTTCGG
66 TCCTCTCTCTCCGGCATCAGCCGCTGCAATAGGAGCCGCTGTTTACGGTGGAGCTTCTAGTTCGG
123425 CA
131 CA
*
123427 CCTCACCAAGCTCCTCCACAATCTGATCCTATCGGAACCGGAGTTTTCATGCCGAACTATGCTCC
1 CCTCACCAAGCTCCTCCACAATCTGAGCCTATCGGAACCGGAGTTTTCATGCCGAACTATGCTCC
* * * *
123492 TCCTCCCTCTCCGGCATCAGCCGCTGCAATCGGAGCTGCTGTTTACGGTGGAGCTTCTAGTTTGG
66 TCCTCTCTCTCCGGCATCAGCCGCTGCAATAGGAGCCGCTGTTTACGGTGGAGCTTCTAGTTCGG
123557 CA
131 CA
* *
123559 CCTCACCAAGCTCCTCCACAATCTGAACCTACCGGAACCGGAGTTTTCATGCCGAACTATGCTCC
1 CCTCACCAAGCTCCTCCACAATCTGAGCCTATCGGAACCGGAGTTTTCATGCCGAACTATGCTCC
*
123624 TCCTC-CATCTCCGGCATCAGCCGCTGCAATTGGAGCCGCTGT
66 TCCTCTC-TCTCCGGCATCAGCCGCTGCAATAGGAGCCGCTGT
123666 AGCTTCTACT
Statistics
Matches: 348, Mismatches: 22, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
131 1 0.00
132 347 1.00
ACGTcount: A:0.19, C:0.34, G:0.21, T:0.26
Consensus pattern (132 bp):
CCTCACCAAGCTCCTCCACAATCTGAGCCTATCGGAACCGGAGTTTTCATGCCGAACTATGCTCC
TCCTCTCTCTCCGGCATCAGCCGCTGCAATAGGAGCCGCTGTTTACGGTGGAGCTTCTAGTTCGG
CA
Found at i:129719 original size:61 final size:64
Alignment explanation
Indices: 129642--129775 Score: 211
Period size: 65 Copynumber: 2.1 Consensus size: 64
129632 AAGCAAGGAA
* *
129642 AAAAACCTCAAATTAAAAGTT-AAAAGAACAAC-C-CAAGTTAAGAAATTAGTAAAAGAACAAT
1 AAAAAGCTCAAATTAAAAGTTAAAAAGAACAACACTCAAATTAAGAAATTAGTAAAAGAACAAT
129703 AAAAAGCTCAAATTAAAAGTTAAAAAGAACAACAACTCAAATTAAGAAATTAGTAAAAGAACAAT
1 AAAAAGCTCAAATTAAAAGTTAAAAAGAACAAC-ACTCAAATTAAGAAATTAGTAAAAGAACAAT
*
129768 GAAAAGCT
1 AAAAAGCT
129776 AAAAAGAATG
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
61 20 0.30
62 11 0.17
64 1 0.02
65 34 0.52
ACGTcount: A:0.60, C:0.12, G:0.10, T:0.18
Consensus pattern (64 bp):
AAAAAGCTCAAATTAAAAGTTAAAAAGAACAACACTCAAATTAAGAAATTAGTAAAAGAACAAT
Found at i:129730 original size:33 final size:35
Alignment explanation
Indices: 129679--129775 Score: 107
Period size: 29 Copynumber: 2.9 Consensus size: 35
129669 ACAACCCAAG
129679 TTAAGAAATTAGTAAAAGAACAATAAAAAGCTCAAA
1 TTAAGAAATTAG-AAAAGAACAATAAAAAGCTCAAA
* *
129715 TTAA-AAGTTA-AAAAGAAC---AACAA-CTCAAA
1 TTAAGAAATTAGAAAAGAACAATAAAAAGCTCAAA
*
129744 TTAAGAAATTAGTAAAAGAACAATGAAAAGCT
1 TTAAGAAATTAG-AAAAGAACAATAAAAAGCT
129776 AAAAAGAATG
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
29 10 0.20
30 9 0.18
32 8 0.16
33 8 0.16
35 8 0.16
36 6 0.12
ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20
Consensus pattern (35 bp):
TTAAGAAATTAGAAAAGAACAATAAAAAGCTCAAA
Found at i:129743 original size:29 final size:31
Alignment explanation
Indices: 129668--129766 Score: 94
Period size: 29 Copynumber: 3.1 Consensus size: 31
129658 AAGTTAAAAG
* *
129668 AACAACCCAAGTTAAGAAATTAGTAAAAGAAC
1 AACAACTCAAATTAAGAAATTAG-AAAAGAAC
* *
129700 AATAAAAAGCTCAAATTAA-AAGTTA-AAAAGAAC
1 ---AACAA-CTCAAATTAAGAAATTAGAAAAGAAC
129733 AACAACTCAAATTAAGAAATTAGTAAAAGAAC
1 AACAACTCAAATTAAGAAATTAG-AAAAGAAC
129765 AA
1 AA
129767 TGAAAAGCTA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
29 10 0.19
30 9 0.17
32 10 0.19
33 8 0.15
35 9 0.17
36 8 0.15
ACGTcount: A:0.61, C:0.12, G:0.10, T:0.17
Consensus pattern (31 bp):
AACAACTCAAATTAAGAAATTAGAAAAGAAC
Found at i:129783 original size:33 final size:34
Alignment explanation
Indices: 129680--129783 Score: 98
Period size: 33 Copynumber: 3.2 Consensus size: 34
129670 CAACCCAAGT
129680 TAAGAAATTAGTAAAAGAACAATAAAAAGCTCAAA
1 TAAGAAATTAGTAAAAGAACAAT-AAAAGCTCAAA
* *
129715 TTAA-AAGTTA--AAAAGAAC-A-ACAA-CTCAAA
1 -TAAGAAATTAGTAAAAGAACAATAAAAGCTCAAA
129744 TTAAGAAATTAGTAAAAGAACAATGAAAAGCT-AAA
1 -TAAGAAATTAGTAAAAGAACAAT-AAAAGCTCAAA
129779 -AAGAA
1 TAAGAA
129784 TGGACCTTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
29 10 0.18
30 8 0.14
32 9 0.16
33 14 0.25
35 11 0.19
36 5 0.09
ACGTcount: A:0.62, C:0.09, G:0.12, T:0.17
Consensus pattern (34 bp):
TAAGAAATTAGTAAAAGAACAATAAAAGCTCAAA
Found at i:132115 original size:15 final size:15
Alignment explanation
Indices: 132095--132125 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
132085 ACAATACATT
132095 AACTATCAAATAGAA
1 AACTATCAAATAGAA
132110 AACTATCAAATAGAA
1 AACTATCAAATAGAA
132125 A
1 A
132126 CATGTTAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (15 bp):
AACTATCAAATAGAA
Found at i:132172 original size:14 final size:14
Alignment explanation
Indices: 132153--132187 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
132143 CCTTTTAAAT
132153 TAAAATAGTAAAAA
1 TAAAATAGTAAAAA
*
132167 TAAAATGGTAAAAA
1 TAAAATAGTAAAAA
132181 TAAAATA
1 TAAAATA
132188 ATTATAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.23
Consensus pattern (14 bp):
TAAAATAGTAAAAA
Found at i:134391 original size:14 final size:13
Alignment explanation
Indices: 134365--134407 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
134355 ATTAAAAAGG
134365 GTTTGGGTGTTTT
1 GTTTGGGTGTTTT
134378 AGTTTAGGGT-TTTT
1 -GTTT-GGGTGTTTT
*
134392 GTTTTGGTGTTTT
1 GTTTGGGTGTTTT
134405 GTT
1 GTT
134408 GGTGTTTGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 3 0.12
13 11 0.42
14 8 0.31
15 4 0.15
ACGTcount: A:0.05, C:0.00, G:0.33, T:0.63
Consensus pattern (13 bp):
GTTTGGGTGTTTT
Found at i:137354 original size:52 final size:52
Alignment explanation
Indices: 137292--137395 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
137282 TTTGACTTCC
137292 CTTGGACATATTATAAGTAGGGTGATCAGTTTCATGTGATTATTTATGGTTA
1 CTTGGACATATTATAAGTAGGGTGATCAGTTTCATGTGATTATTTATGGTTA
137344 CTTGGACATATTATAAGTAGGGTGATCAGTTTCATGTGATTATTTATGGTTA
1 CTTGGACATATTATAAGTAGGGTGATCAGTTTCATGTGATTATTTATGGTTA
137396 TTGATCATCA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (52 bp):
CTTGGACATATTATAAGTAGGGTGATCAGTTTCATGTGATTATTTATGGTTA
Found at i:146314 original size:33 final size:33
Alignment explanation
Indices: 146275--146372 Score: 171
Period size: 33 Copynumber: 3.0 Consensus size: 33
146265 TCTCCACAAG
146275 CTGCAAGGCCACAGACAAATTTGAGCTCTCCAC
1 CTGCAAGGCCACAGACAAATTTGAGCTCTCCAC
*
146308 CTGCAAGGCCACAGACAAATTTGACCTCTCCAC
1 CTGCAAGGCCACAGACAAATTTGAGCTCTCCAC
146341 CTGCAAGGCCACAGACAAATTTG-GCCTCTCCA
1 CTGCAAGGCCACAGACAAATTTGAG-CTCTCCA
146373 TCTAGTGCAC
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.30, C:0.35, G:0.17, T:0.18
Consensus pattern (33 bp):
CTGCAAGGCCACAGACAAATTTGAGCTCTCCAC
Found at i:149316 original size:47 final size:46
Alignment explanation
Indices: 149265--149402 Score: 141
Period size: 47 Copynumber: 2.9 Consensus size: 46
149255 GTTGGTCCCC
* *
149265 AAAGTCGTGATTGTTAGCATTTAGAACTTTGGTCAGTTTTGGCCTCG
1 AAAGTCGTGATGGTTAGC-TTTTGAACTTTGGTCAGTTTTGGCCTCG
** * * * * *
149312 AAAGTAATGATGGTTAGCTTTTGAATTTTCGACTAATTTTGGCCTTG
1 AAAGTCGTGATGGTTAGCTTTTGAACTTTGGTC-AGTTTTGGCCTCG
** *
149359 AAAGTCGTGATGGTCCGCTTTTGGACTTTTGGTCAGTTTTGGCC
1 AAAGTCGTGATGGTTAGCTTTTGAAC-TTTGGTCAGTTTTGGCC
149403 CTCATAAGTG
Statistics
Matches: 71, Mismatches: 18, Indels: 4
0.76 0.19 0.04
Matches are distributed among these distances:
46 11 0.15
47 55 0.77
48 5 0.07
ACGTcount: A:0.20, C:0.14, G:0.25, T:0.40
Consensus pattern (46 bp):
AAAGTCGTGATGGTTAGCTTTTGAACTTTGGTCAGTTTTGGCCTCG
Found at i:149558 original size:47 final size:46
Alignment explanation
Indices: 149488--149576 Score: 119
Period size: 47 Copynumber: 1.9 Consensus size: 46
149478 TACTCACTGG
*
149488 AATTTTGACCCCGAAAGTCGTGATGGTTA-CTCTTTGGAATTTTGGTT
1 AATTTTGACCCCGAAAGTCGTGATGCTTAGC-CTTTGG-ATTTTGGTT
*
149535 AATTTT-ATCCCCGAAAGTTGTGATGCTTAGCCTTTGGATTTT
1 AATTTTGA-CCCCGAAAGTCGTGATGCTTAGCCTTTGGATTTT
149577 CATCCATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
46 6 0.16
47 31 0.82
48 1 0.03
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (46 bp):
AATTTTGACCCCGAAAGTCGTGATGCTTAGCCTTTGGATTTTGGTT
Found at i:154246 original size:334 final size:333
Alignment explanation
Indices: 151666--154991 Score: 4125
Period size: 332 Copynumber: 10.0 Consensus size: 333
151656 ACCATGATGG
* * * **
151666 ACCATCACGGATATTGGTTAAAAACGCGTTCCGGGGCCCCTTCTCAGTTTTCAATGATTTTTGGC
1 ACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGGC
* * *
151731 CCTGAGACTCCTTTACATATCTATATTCATCTAACCAAATCTCAGTCAAATTGGATTTAAGGATT
66 CCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATT
* ** * * *
151796 TGATTTTACGAGCATCAGATTTTTGTATCGATTTAATCAGAAATTAATTCGAAAACATATAGGAA
131 TGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGGAAAGATATAGGAA
* * * *
151861 ACTTGATATTAGAAGCGTGAAAAACCCTTCAATCATTTTGGCGTTGAATTATATATATTCTATAA
196 AATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATACATATTCTATAA
** * *
151926 GTGTTTTTTCTAAAGATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATC
261 GTGTTTTGGCCAAAGATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATC
151991 GTGTACT-
326 GTGTACTA
* * * **
151998 ACCATCACGGATTTTGGCTAAAAACGCGTTCCGGGGCCCCGACTCAGTCTAAAATGATTTTTGGC
1 ACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGGC
* * *
152063 CCCGAGACTCCTTGACATATGTATA-T-AT-T---C--ATCT-AACCAAATTGGATCTAAGGATT
66 CCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATT
* * * * *
152119 TGATCTTACGATCATCAGAATGATG--T---TTTGATCAGAAATTAATTCGGAAA-ATATATGAA
131 TGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGGAAAGATATAGGAA
* * *
152178 AATCGATATTAGAAGCGTGAAAAACCCTTCAATC-TTTTGGAGTTGAATTTTATATATTCTATAA
196 AATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATACATATTCTATAA
* * * * *
152242 GTTTTTTGGCCAAATATTGTTGAAAAAATGTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAAT
261 GTGTTTTGGCCAAAGATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAT
*
152307 CATGTACTA
325 CGTGTACTA
** * * * *
152316 ACCATCACAATTTTTTGGCTAAAATCGCGTTCCGAGCCCCCGGCTTAGTTTTCAATGATTTTTGG
1 ACCATCAC-GGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGG
* * * * * **
152381 CCTCGAGACTCCTTGATATATCTATATTAATCTAACCATATCTCGGCCAAATTGGATTTAAATAT
65 CCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGAT
* * * * * * *
152446 TTGATTTTACGAGTATCAGAATAATGTTTCGGTTT-AGCTTGAAATTAATTCTGAAAGATTTAGG
130 TTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATC-AGAAATTAATTCGGAAAGATATAGG
* ** * * * * *
152510 AAAATCGATATTATACCCGTGAAAAACCCTTCAATTTTTTTGGTGTTAAATTAAACAAATTCTAT
194 AAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATACATATTCTAT
*
152575 AAGTGTTTTGGCCAAAGATTGTGGAAAAAAATTT-GGGTCAATTTTTGCAAAATTTTA-CTCGAA
259 AAGTGTTTTGGCCAAAGATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGC-CGAA
152638 ATCGTGTACTA
323 ATCGTGTACTA
* * * * * * * *
152649 ACCATCACAGATATTGGTTAAAAACGCGTTCCGGGGACTCGGTTCAGTTTTCAATGATTTTTAGC
1 ACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGGC
* ** * *
152714 CCCGAGACTCCCTGACATATCTATATTCATCTAATGAAATTTCAGCCAAATTGGATTTGAGGATT
66 CCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATT
* * * ** *
152779 TGATTTTACGAGCATCAGAATTATGTTTCGAGTTAATAAGAAATTAATT-AAAAATGATTTAGGA
131 TGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGGAAA-GATATAGGA
* * *
152843 AAATCGATATTAGAAGCGTAAAAAAACCCTTCAATCTTTTTGGTGTTGAA-T-T-CATATTATAT
195 AAATCGATATTAGAAGCGT-GAAAAACCCTTCAATCTTTTTGGCGTTGAATTATACATATTCTAT
* *
152905 AAATGTTTTGGCCAAAGATTGTGGAAAAAACCTTTCGGGTC-ATTTCTTGTAAAATTTTAGCCGA
259 AAGTGTTTTGGCCAAAGATTGTGGAAAAAA-CTTTCGGGTCAATTT-TTGCAAAATTTTAGCCGA
152969 AATCGTGTACTA
322 AATCGTGTACTA
* * * * * *
152981 ACTATTACGGTTTTTTGCTAAAAACACGTTCCGGGGCCCTGGCTCAGTTTTCATTGATTTTTGGC
1 ACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGGC
** * * * *
153046 CCAAAGACTCCTCGACATATCTATATTCATCTAACCAAATCTCAGCCATATTGGAATAAAGGATT
66 CCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATT
* * * * *
153111 TGATTTAACGAACATCAGAATCATGTTTCGATTTAATCAAAAATTTATTCGGAAACATATAGGAA
131 TGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGGAAAGATATAGGAA
* * * *
153176 AATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGTGTTAAATTAAACAAATTCTATAA
196 AATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATACATATTCTATAA
* * *
153241 GTGTTTTGGCCAAATATTGTGGAAAAAAATTT-GGGTCAATTTTTGCAAAATTTTACCCGAAATC
261 GTGTTTTGGCCAAAGATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATC
153305 GTGTACGT-
326 GTGTAC-TA
* * * * *
153313 --CA-CA--GATATTGGTTAAAAACGCGTTCCGGGGACTCGGCTCAGTTTTCAATGATTTTTGGC
1 ACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGGC
* *
153373 CCCGAGACTCCCTGACATATCTATATTCATCTAACCAAATCTCAGCCATATTGGATTTAAGGATT
66 CCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATT
* * * * *
153438 TGATTTAACGAACATCAGAATAATGTTTCGATTTAATCAGAAATTAATTCGGAAACATATAGAAA
131 TGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGGAAAGATATAGGAA
* * *
153503 AATCGATATTAGAAGCGTAAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATATATTCTATTA
196 AATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATACATATTCTATAA
** *
153568 GTGTTTTTTCTAAAGATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATC
261 GTGTTTTGGCCAAAGATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATC
153633 GTGTACTA
326 GTGTACTA
* * **
153641 ACCATTACGGATTTTTGGCTAAAAACGCGTTCCGGGGCCCCAGCTCAGTTTAAAATGATTTTTGG
1 ACCATCACGG-TTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGG
* * *
153706 CCCCCGAGACTCCTTGACATATGTATATATTCATCTAACCAAATCTTAGCCAAATTGGATCTAAG
65 -CCCCGAGACTCCTTGACATA--TCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAG
** * ** *
153771 GATTTGATCGTACGAGTATCAGAATCATGTTTTTATTTAATCAGAAATTAATTTGGAAA-ATATA
127 GATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGGAAAGATATA
* * ** * *
153835 TGAAAATCGATATTAGAAGGGTGAAAAGTCCTTCAATCTTTTTGGAGTTGAATTATATATATTCT
192 GGAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATACATATTCT
* * * * * * *
153900 ATAAGTGTTTTGGCCAAATATTTTTGAAAAAATGTTTTGGGCCAATTTTTACAAAATTTTAGCCG
257 ATAAGTGTTTTGGCCAAAGATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCG
*
153965 AAATCATGTACTA
321 AAATCGTGTACTA
* * *
153978 ACCATCACTGTTTTTGGCTAAAATCGCGTTCCGGGCCCCCGGCTCAGTTTTCAATGATTTTTGGC
1 ACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGGC
* * * * *
154043 CCGGAGACTCCTTGACATATCTATATTAATCTAACCATATCTCGGCCAAATTGGATTTAAAGATT
66 CCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATT
* *
154108 TGATTTTACGAGCATCAGAATCATGTTTCGATTT-AGCTTGAAATTAATTCGGAAAGATATAGGA
131 TGATTTTACGAGCATCAGAATCATGTTTCGATTTAATC-AGAAATTAATTCGGAAAGATATAGGA
* * ** *
154172 AAATCCATATTATACCCGTGAAAAACCCTTCAATCTTCTTGGCGTTGAATTATACATATTCTATA
195 AAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATACATATTCTATA
* * * *
154237 AGTGTTTTGGCAAAAGATTGTGGAAAAAACTTTCGGTTCAATTTTTGAAAAATTTTAGCCGAAAC
260 AGTGTTTTGGCCAAAGATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAT
154302 CGTGTACTA
325 CGTGTACTA
* * * ** * *
154311 ATCATGACGGTTTTTGGCTAATAACGCGTTTTGGGGCCCCGGTTTAGTTTTCAATGATTTTTGGC
1 ACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGGC
* * ** *
154376 CCAGAAACTCCTTGACATATCTATATTCATCTAATGAAATTTCAGCCAAATTGGATTTAAGGATT
66 CCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATT
* * * *** * *
154441 TGATTTGACGAGCATCAGAATTATGTTTCGAGTTAATCAGAAATTAATTTAAAAAAGATTTAAGA
131 TGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAA-TTCGGAAAGATATAGGA
* * *
154506 AAATCAATATTAGAAGCGTGAAAAAACCCTTCAATATTTTTGGCGTTGAATTATACATATTCTAA
195 AAATCGATATTAGAAGCGTG-AAAAACCCTTCAATCTTTTTGGCGTTGAATTATACATATTCTAT
* * * *
154571 AAATGTTTTGGCCAAAGATTTTGGAAAAAACCTTTCGGGTCAATTCTTGCAAAATTTTAGCCGAG
259 AAGTGTTTTGGCCAAAGATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
*
154636 ATCTTGTAC--
323 ATCGTGTACTA
* *
154645 ACAATCACGGTTTTTTGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGGC
1 ACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGGC
* * *
154710 CTCGAGACTCCTCGACATATCTATATTCATCTAACCAAATTTCAGCCAAATTGGATTTAAGGATT
66 CCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATT
* **
154775 TGATTTTACGAGCATTAGAATCATGTTTCGATTTAATCAGAAATTAATTAAGAAAGATATAGGAA
131 TGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGGAAAGATATAGGAA
* * * *
154840 AATCAATATTAGAACCGTGAAAAACCCTTCAATATTTTTGGCGTTGAATTTTACATATTCTATAA
196 AATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATACATATTCTATAA
* * * *
154905 GTGTTTTGGCCAAATATTGT-GAAAAAATCTTCCAGGTCAATTTTTGCAAAATTTTATCCGAAAT
261 GTGTTTTGGCCAAAGATTGTGGAAAAAA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAT
* *
154969 CATTTACTA
325 CGTGTACTA
**
154978 AATATCACGGTTTT
1 ACCATCACGGTTTT
154992 AAGCTAAATA
Statistics
Matches: 2566, Mismatches: 374, Indels: 107
0.84 0.12 0.04
Matches are distributed among these distances:
316 50 0.02
317 80 0.03
318 30 0.01
319 68 0.03
320 1 0.00
321 3 0.00
322 1 0.00
323 39 0.02
324 4 0.00
325 1 0.00
326 1 0.00
327 257 0.10
328 75 0.03
329 2 0.00
330 43 0.02
331 83 0.03
332 547 0.21
333 419 0.16
334 397 0.15
335 155 0.06
336 174 0.07
337 136 0.05
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (333 bp):
ACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGGC
CCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATT
TGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATTAATTCGGAAAGATATAGGAA
AATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATACATATTCTATAA
GTGTTTTGGCCAAAGATTGTGGAAAAAACTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATC
GTGTACTA
Found at i:155217 original size:263 final size:262
Alignment explanation
Indices: 154751--155271 Score: 665
Period size: 263 Copynumber: 2.0 Consensus size: 262
154741 TAACCAAATT
*
154751 TCAGCCAAATTGGATTTAAGGATTTGATTTTACGAGCATTAGAATCATGTTTCGATTTAATCAGA
1 TCAGCCAAATTGGATTTAAGGATTTGATTTTACAAGCATTAGAATCATGTTTCGATTTAATCAGA
* *
154816 AATTAATTAAGAAAGATATAGGAAAATCAATATTAGAACCGTGAAAAACCCTTCAATATTTTTGG
66 AATTAATTAAGAAAAAAATAGGAAAATCAATATTAGAACCGTGAAAAACCCTTCAATATTTTTGG
* ** * * * *
154881 CGTTGAATTTTACATATTCTATAAGTGTTTTGGCCAAATATTGTGAAAAAATCTTCCAGGTCAAT
131 CGTTGAATTATACATATTCTATAAGAATTGTGGCCAAAAATTGAGAAAAAATCTTCCAGATCAAT
* * *
154946 TTTTGCAAAATTTTATCCGAAATCATTTACTAAATATCACGGTTTTAAGCTAAATATGCGTTTTG
196 TTTTGCAAAATTTTAGCCGAAATCATGTACTAAATATCACGGTTTTAAGCTAAAAATGCGTTTTG
155011 GG
261 GG
** * *
155013 TCAGCCACGTTGGATTTAAGGATTTGTTTTTACAAGCA-TATGAATTATGTTTCGATTTAATTC-
1 TCAGCCAAATTGGATTTAAGGATTTGATTTTACAAGCATTA-GAATCATGTTTCGATTTAA-TCA
* * * *
155076 GAAATTAATTTAGAAAAAAAATTGGAAAAAT-GATATTAGAAGCC-TGAAAAACCCTTCAATCTT
64 GAAATTAATTAAG-AAAAAAATAGG-AAAATCAATATTAGAA-CCGTGAAAAACCCTTCAATATT
* * * * * * * *
155139 TTTGG-GTTTGAATTATATATTTTTTATGAGAATTGTGGCCAAAAATTGAGGAAAAATTTTTCTG
126 TTTGGCG-TTGAATTATACATATTCTATAAGAATTGTGGCCAAAAATTGAGAAAAAATCTTCCAG
* **
155203 ATCAATTTTTGCAAAATTTTAGCCGAAATCATGTATTATCTATCACGGTTTTAAGCTAAAAATGC
190 ATCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAAATATCACGGTTTTAAGCTAAAAATGC
155268 GTTT
255 GTTT
155272 CGGGGCCCCG
Statistics
Matches: 221, Mismatches: 32, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
261 2 0.01
262 65 0.29
263 147 0.67
264 7 0.03
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (262 bp):
TCAGCCAAATTGGATTTAAGGATTTGATTTTACAAGCATTAGAATCATGTTTCGATTTAATCAGA
AATTAATTAAGAAAAAAATAGGAAAATCAATATTAGAACCGTGAAAAACCCTTCAATATTTTTGG
CGTTGAATTATACATATTCTATAAGAATTGTGGCCAAAAATTGAGAAAAAATCTTCCAGATCAAT
TTTTGCAAAATTTTAGCCGAAATCATGTACTAAATATCACGGTTTTAAGCTAAAAATGCGTTTTG
GG
Found at i:155415 original size:596 final size:596
Alignment explanation
Indices: 154417--156823 Score: 1878
Period size: 596 Copynumber: 4.0 Consensus size: 596
154407 TAATGAAATT
* * * *
154417 TCAGCCAAATTGGATTTAAGGATTTGATTTGACGAGCATCA-GAATTATGTTTCGAGTTAA-TCA
1 TCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCATGAATTATGTTTCGATTTAATTC-
* ** * * * *
154480 GAAATTAATTTA-AAAAAGATTTAAGAAAATCAATATTAGAAGCGTGAAAAAACCCTTCAATATT
65 GAAATTAATTTAGAAAAAAATTGGATAAAAT-GATATTAGAAGCCTG-AAAAACCCTTCAATCTT
* * * * * * ** **
154544 TTTG-GCGTTGAATTATACATATTCTA--AAAATGTTTTGGCCAAAGATTTTGGAAAAAACCTTT
128 TTTGAG-TTTGAATTATATATTTTCTATGAGAA--TTGT-GCCAAAAATTGAGG-AAAAATTTTT
* * * * * **
154606 CGGGTCAATTCTTGCAAAATTTTAGCCGAGATCTTGTAC-A-CAATCACGGTTTTTTGCTAAAAA
188 CGGATCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTATCCATCACGGTTTTAAGCTAAAAA
* * * * * *
154669 CGCGTTCCGGGGCCCCGGCTCAGTTTTCAATGATTTTTGGCCTCGAGACTCCTCGACATATCTAT
253 CGCGTTTCGGGGCCCCGACTCAGTTTTCAATGATTTTTGGCCTCGAGAATCATTGAAATATCTAT
** * ** *
154734 ATTCATCTAACCAAATTTCAGCCAAATTGGATTTAAGGATTTGATTTTACGAGCATTAGAATCAT
318 ATTCATCTAACCAAATCCCAGCCACATTAAATTTAAGGATTTGATTTTACGAGCATCAGAATCAT
* *
154799 GTTTCGATTTAATCAGAAATTAATTAAGAAAGATATAGGAAAATCAATATTAGAACCGTGAAAAA
383 GTTTCGATTTAATCAGAAATTAATTAAGAAAGATATAGGAAAATCGATATTAGAAGCGTGAAAAA
* * *
154864 CCCTTCAATATTTTTGGCGTTGAATTTTACATATTCTATAAGTGTTTTGGCCAAATATTGTGAAA
448 CCCTTCAATCTTTTTGGCGTTGAATTATACATATTCTATAAGTGTTTTGGCCAAAAATTGTGAAA
* * * * **
154929 AAATCTTCCAGGTCAATTTTTGCAAAATTTTATCCGAAATCATTTACTAAATATCACGGTTTTAA
513 AAATCTTTCAGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTAA
*
154994 GCTAAATATGCGTTTTGGG
578 GCTAAATATGCGTTCTGGG
* *
155013 TCAGCCACGTTGGATTTAAGGATTTGTTTTTACAAGCAT-ATGAATTATGTTTCGATTTAATTCG
1 TCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCATGAATTATGTTTCGATTTAATTCG
155077 AAATTAATTTAGAAAAAAAATTGGA-AAAATGATATTAGAAGCCTGAAAAACCCTTCAATCTTTT
66 AAATTAATTTAG-AAAAAAATTGGATAAAATGATATTAGAAGCCTGAAAAACCCTTCAATCTTTT
* * *
155141 TGGGTTTGAATTATATATTTTTTATGAGAATTGTGGCCAAAAATTGAGGAAAAATTTTTCTGATC
130 TGAGTTTGAATTATATATTTTCTATGAGAATTGT-GCCAAAAATTGAGGAAAAATTTTTCGGATC
* * *
155206 AATTTTTGCAAAATTTTAGCCGAAATCATGTATTATCTATCACGGTTTTAAGCTAAAAATGCGTT
194 AATTTTTGCAAAATTTTAGCCGAAATCATGTACTATCCATCACGGTTTTAAGCTAAAAACGCGTT
*
155271 TCGGGGCCCCGACTCAGTTTTGC-ATGATTTTTGG-CACGAAGAATCATTGAAATATCTATATTC
259 TCGGGGCCCCGACTCAGTTTT-CAATGATTTTTGGCCTCG-AGAATCATTGAAATATCTATATTC
* * *
155334 ATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGATTTTACTAGCATCAGAATCATGTTT
322 ATCTAACCAAATCCCAGCCACATTAAATTTAAGGATTTGATTTTACGAGCATCAGAATCATGTTT
* * * * * *
155399 CGATTTAATTAGAAATTAATTAGGAAACATATAGGAAAATTGATATTAGAAGTGTGACAAACCCT
387 CGATTTAATCAGAAATTAATTAAGAAAGATATAGGAAAATCGATATTAGAAGCGTGAAAAACCCT
* * * *
155464 TCAATCTTTTTGGTGTTAAATTATACAAATTCTATAAGTGTTTTGGCCAAAGATTGTTGAAAAAA
452 TCAATCTTTTTGGCGTTGAATTATACATATTCTATAAGTGTTTTGGCCAAAAATTG-TGAAAAAA
** * * **
155529 -CTTTTGGGTCAATTTTTGCAAAATTTTACCCGAGATCGTGTACTAACCATCACGGTTTTTTGGC
516 TCTTTCAGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGG-TTTTAAGC
* *
155593 TAAA-ACGCGTTCCGGG
580 TAAATATGCGTTCTGGG
* * * ** * **** * * *
155609 GC-CCCGGC-TCAG-TTTAAAATGATTT-TTGGCCCCGAG-ACTCCTTCACA-TATGTAT--ATA
1 TCAGCC-ACATTGGATTT--AAGGATTTGTT-TTTACGAGCA-T-CATGA-ATTATGTTTCGAT-
** * *** * ** * * * *
155666 TT-CCTCTAACCAAATCTCAG--CCAAATTGGATCTAAGGATTTGATCTTACG-AGCATCAGAAT
58 TTAATTCGAAATTAAT-TTAGAAAAAAATTGGA--TAA--A-ATGATATTA-GAAGC--CTGAAA
* *** ** ** * * *** * ** **
155727 CATGTTTTGAT-TTAATCAGAAATTAATTCGGAAAATATATGAAAATCGATATTAGAAGCGTGAA
114 AACCCTTCAATCTT--TTTG--AGT--TT--G-AATTATAT-ATTTTC--TATGAGAATTGTGCC
* * * ***
155791 AAACCCTTCAATCTTTTTGTAGTTGAATTATATATATTC-TAT-AAGTGTTTTGGGCCAATTTTA
167 AAA------AA-----TTG-AG--GAA--AAAT-TTTTCGGATCAA-T-TTTT-GCAAAATTTTA
* * ** ** * * *
155854 GCCGAAAACATGTACTAACCATCACGGTTTTTGGAAAAAATAC-CG-TTCTGGGACCTCGGCTCA
212 GCCGAAATCATGTACTATCCATCACGGTTTTAAGCTAAAA-ACGCGTTTC-GGGGCCCCGACTCA
* * * * *
155917 GTTTTCAATGATTTTTGGCCCCGAGACA-CATTGACATATCTATATCCATCTAACCATATCTC-G
275 GTTTTCAATGATTTTTGGCCTCGAGA-ATCATTGAAATATCTATATTCATCTAACCAAATCCCAG
* * ** * * *
155980 GCATATTGGATTTAAAGATTTGATTTTACGAGCATCAGAATTATGTTTCGAGTTAATCAGAAATT
339 CCACATTAAATTTAAGGATTTGATTTTACGAGCATCAGAATCATGTTTCGATTTAATCAGAAATT
* * * * **
156045 AATTAAAAAAGATTTAGGAAAATCGATATTAAAAGCGTGAAAAAACCCTTGAATCTTTTTTTCGT
404 AATTAAGAAAGATATAGGAAAATCGATATTAGAAGCGTG-AAAAACCCTTCAATCTTTTTGGCGT
* * * *
156110 TGAATTATACATATTCTATAAATGTTTTGGCCAAAAATTTTGGAAAAAAACCTTT-AGGGTTAAT
468 TGAATTATACATATTCTATAAGTGTTTTGGCCAAAAATTGT-G-AAAAAATCTTTCA-GGTCAAT
* ** * *
156174 TCTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGCTATATTCAT-C-TAA
530 TTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTAAGCTA-AAT-ATGCGT-T
***
156237 CTAAA
592 CTGGG
** * * * *
156242 TCCCAGCCACATTAAATTTAAGGATCTGTTTTTACGAGCATC-TGGATCATGTTTCGATGTAATT
1 T--CAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCATGAATTATGTTTCGATTTAATT
* *
156306 CGAAATTAATTTAGAAAAAAATTGGA-AAAATGATATTAAAAGCCTTAAAAACCCTTCAATCTTT
64 CGAAATTAATTTAGAAAAAAATTGGATAAAATGATATTAGAAGCCTGAAAAACCCTTCAATCTTT
* * *
156370 TTGACTTTGAATTATATATTTTCTATGAGAATTGTACCAAAAATTGAGGAAAAATTTTTCGGAGC
129 TTGAGTTTGAATTATATATTTTCTATGAGAATTGTGCCAAAAATTGAGGAAAAATTTTTCGGATC
* * * *
156435 AATTTTTGCAAAATTTTTGCCGAAATCGTGTACTATCCATCACGGTTTTAAGTTAAAAACACGTT
194 AATTTTTGCAAAATTTTAGCCGAAATCATGTACTATCCATCACGGTTTTAAGCTAAAAACGCGTT
* *
156500 TCGGGGCCGCGACTCAGTTTTGC-ATGATTTTTGG-CTCGAAGAATCCTTGAAATATCTATATTC
259 TCGGGGCCCCGACTCAGTTTT-CAATGATTTTTGGCCTCG-AGAATCATTGAAATATCTATATTC
* ** * *
156563 ATTTAATTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTT
322 ATCTAACCAAATCCCAGCCACATTAAATTTAAGGATTTGATTTTACGAGCATCAGAATCATGTTT
* ** * * * *
156628 CAATTTAATTTGAAATTAATTCAGAAA-AAAGT-GGAAAAACGATATTAGAAGAGTGAAAAACCC
387 CGATTTAATCAGAAATTAATTAAGAAAGATA-TAGGAAAATCGATATTAGAAGCGTGAAAAACCC
* * * * * * * * *
156691 TTCAATCTTTTTGGCTTTGAATTATATACATTTTATGA-TAATTATGGCCAAAAATTGAGGAAAA
451 TTCAATCTTTTTGGCGTTGAATTATACATATTCTATAAGT-GTTTTGGCCAAAAATTGTGAAAAA
* *
156755 ATTTTTC-GGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCCATCACGGTTTTAAG
515 ATCTTTCAGG-TCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTAAG
*
156819 TTAAA
579 CTAAA
156824 AACACGTTTC
Statistics
Matches: 1400, Mismatches: 306, Indels: 211
0.73 0.16 0.11
Matches are distributed among these distances:
594 52 0.04
595 66 0.05
596 452 0.32
597 38 0.03
598 75 0.05
599 121 0.09
600 85 0.06
601 8 0.01
602 11 0.01
603 5 0.00
605 3 0.00
606 3 0.00
607 2 0.00
609 1 0.00
610 7 0.00
611 4 0.00
612 4 0.00
613 9 0.01
617 12 0.01
618 2 0.00
619 3 0.00
620 7 0.00
621 1 0.00
623 5 0.00
624 2 0.00
625 2 0.00
626 3 0.00
627 4 0.00
628 14 0.01
629 104 0.07
630 166 0.12
631 21 0.01
632 52 0.04
633 10 0.01
634 6 0.00
635 22 0.02
636 15 0.01
637 3 0.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (596 bp):
TCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCATGAATTATGTTTCGATTTAATTCG
AAATTAATTTAGAAAAAAATTGGATAAAATGATATTAGAAGCCTGAAAAACCCTTCAATCTTTTT
GAGTTTGAATTATATATTTTCTATGAGAATTGTGCCAAAAATTGAGGAAAAATTTTTCGGATCAA
TTTTTGCAAAATTTTAGCCGAAATCATGTACTATCCATCACGGTTTTAAGCTAAAAACGCGTTTC
GGGGCCCCGACTCAGTTTTCAATGATTTTTGGCCTCGAGAATCATTGAAATATCTATATTCATCT
AACCAAATCCCAGCCACATTAAATTTAAGGATTTGATTTTACGAGCATCAGAATCATGTTTCGAT
TTAATCAGAAATTAATTAAGAAAGATATAGGAAAATCGATATTAGAAGCGTGAAAAACCCTTCAA
TCTTTTTGGCGTTGAATTATACATATTCTATAAGTGTTTTGGCCAAAAATTGTGAAAAAATCTTT
CAGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTAAGCTAAATA
TGCGTTCTGGG
Found at i:155543 original size:333 final size:334
Alignment explanation
Indices: 155026--155848 Score: 951
Period size: 333 Copynumber: 2.5 Consensus size: 334
155016 GCCACGTTGG
* * *
155026 ATTTAAGGATTTGTTTTTACAAGCAT-ATGAATTATGTTTCGATTTAATTCGAAATTAATTTAGA
1 ATTTAAGGATTTGATTTTACAAGCATCA-GAATCATGTTTCGATTTAATTAGAAATTAA-TTAG-
* * * * *
155090 AAAAAAATTGGAAAAATGATATTAGAAGCCTGAAAAACCCTTCAATCTTTTTGG-GTTTGAATTA
63 GAAAATATAGGAAAATTGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGTG-TTGAATTA
* * * ** * * * *
155154 TATATTTTTTATGAGAATTGTGGCCAAAAATTGAGGAAAAATTTTTCTGATCAATTTTTGCAAAA
127 TATATATTCTATAAGTGTTTTGGCCAAAAATTGAGAAAAAACTTTTCGGATCAATTTTTGCAAAA
* * * * * *
155219 TTTTAGCCGAAATCATGTATTATCTATCACGG-TTTTAAGCTAAAAATGCGTTTCGGGGCCCCGA
192 TTTTACCCGAAATCATGTACTAACCATCACGGTTTTTAAGCT-AAAACGCGTTCCGGGGCCCCGA
*** * * * *
155283 CTCAGTTTTGCATGATTTTTGG-CACGAAGAATCATTGA-A-ATATCTATATTCATTTAACTAAA
256 CTCAGTTTAAAATGATTTTTGGCCACG-AGAATCATTCACATATATATATATTCATCTAACCAAA
*
155345 TCCCAGCCACATTAA
320 TCCCAGCCAAATTAA
*
155360 ATTTAAGGATTTGATTTTACTAGCATCAGAATCATGTTTCGATTTAATTAGAAATTAATTAGGAA
1 ATTTAAGGATTTGATTTTACAAGCATCAGAATCATGTTTCGATTTAATTAGAAATTAATTAGGAA
* * * *
155425 ACATATAGGAAAATTGATATTAGAAGTGTGACAAACCCTTCAATCTTTTTGGTGTTAAATTATAC
66 A-ATATAGGAAAATTGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGTGTTGAATTATAT
* * * *
155490 AAATTCTATAAGTGTTTTGGCCAAAGATTGTTGAAAAAACTTTT-GGGTCAATTTTTGCAAAATT
130 ATATTCTATAAGTGTTTTGGCCAAAAATTG-AGAAAAAACTTTTCGGATCAATTTTTGCAAAATT
* * ** *
155554 TTACCCGAGATCGTGTACTAACCATCACGGTTTTTTGGCTAAAACGCGTTCCGGGGCCCCGGCTC
194 TTACCCGAAATCATGTACTAACCATCACGGTTTTTAAGCTAAAACGCGTTCCGGGGCCCCGACTC
* * * * * *
155619 AGTTTAAAATGATTTTTGGCCCCGAGACTCCTTCACATATGTATATATTCCTCTAACCAAATCTC
259 AGTTTAAAATGATTTTTGGCCACGAGAATCATTCACATATATATATATTCATCTAACCAAATCCC
**
155684 AGCCAAATTGG
324 AGCCAAATTAA
* * * * * *
155695 ATCTAAGGATTTGATCTTACGAGCATCAGAATCATGTTTTGATTTAATCAGAAATTAATTCGGAA
1 ATTTAAGGATTTGATTTTACAAGCATCAGAATCATGTTTCGATTTAATTAGAAATTAATTAGGAA
* *
155760 AATATATGAAAATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTT-GTAGTTGAATTATAT
66 AATATAGGAAAATTGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGT-GTTGAATTATAT
155824 ATATTCTATAAGTGTTTTGGGCCAA
130 ATATTCTATAAGTGTTTT-GGCCAA
155849 TTTTAGCCGA
Statistics
Matches: 413, Mismatches: 66, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
332 3 0.01
333 169 0.41
334 145 0.35
335 96 0.23
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (334 bp):
ATTTAAGGATTTGATTTTACAAGCATCAGAATCATGTTTCGATTTAATTAGAAATTAATTAGGAA
AATATAGGAAAATTGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGTGTTGAATTATATA
TATTCTATAAGTGTTTTGGCCAAAAATTGAGAAAAAACTTTTCGGATCAATTTTTGCAAAATTTT
ACCCGAAATCATGTACTAACCATCACGGTTTTTAAGCTAAAACGCGTTCCGGGGCCCCGACTCAG
TTTAAAATGATTTTTGGCCACGAGAATCATTCACATATATATATATTCATCTAACCAAATCCCAG
CCAAATTAA
Found at i:156829 original size:332 final size:331
Alignment explanation
Indices: 156223--157876 Score: 2699
Period size: 332 Copynumber: 5.0 Consensus size: 331
156213 CGGTTTTTTG
* * *
156223 CTATATTCATCTAACTAAATCCCAGCCACATTAAATTTAAGGATCTGTTTTTACGAGCATCTGGA
1 CTATATTCATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
* * * * * * * *
156288 TCATGTTTCGATGTAATTCGAAATTAATTTAGAAAAAAATTGGAAAAATGATATTAAAAGCCTTA
66 TCATGTTTCGATTTAATTTGAAATTAATTCAG-AAAAAAGTGGAAAAACGATATTAGAAGCGTGA
* * * *
156353 AAAACCCTTCAATCTTTTTGACTTTGAATTATATA-TTTTCTATGAGAATTGT-ACCAAAAATTG
130 AAAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTT-TATGAGAATTATGGCCAAAAATTG
* *
156416 AGGAAAAATTTTTCGGAGCAATTTTTGCAAAATTTTTGCCGAAATCGTGTACTATCCATCACGGT
194 AGGAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCCATCACGGT
*
156481 TTTAAGTTAAAAACACGTTTCGGGGCCGCGACTCAGTTTTGCATGATTTTTGGCTCGAAGAATCC
259 TTTAAGTTAAAAACACGTTTCGGGGCC-CGACTCAGTTTTGCATGATTTTTGGCACGAAGAATCC
156546 TTGAAATAT
323 TTGAAATAT
*
156555 CTATATTCATTTAATTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
1 CTATATTCATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
* *
156620 TCATGTTTCAATTTAATTTGAAATTAATTCAGAAAAAAGTGGAAAAACGATATTAGAAGAGTGAA
66 TCATGTTTCGATTTAATTTGAAATTAATTCAGAAAAAAGTGGAAAAACGATATTAGAAGCGTGAA
*
156685 AAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGATAATTATGGCCAAAAATTGAG
131 AAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAATTGAG
156750 GAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCCATCACGGTTT
196 GAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCCATCACGGTTT
156815 TAAGTTAAAAACACGTTTCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCACGAAGAATCCTT
261 TAAGTTAAAAACACGTTTCGGGG-CCCGACTCAGTTTTGCATGATTTTTGGCACGAAGAATCCTT
156880 GAAATAT
325 GAAATAT
*
156887 CTATATTTATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
1 CTATATTCATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
* * *
156952 TCAAGTTTCGATTTAATTTGAAATTAATTCTGAAAAAAGTGAAAAAACGATATTAGAAGCGTGAA
66 TCATGTTTCGATTTAATTTGAAATTAATTCAGAAAAAAGTGGAAAAACGATATTAGAAGCGTGAA
*
157017 AAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAATTGGG
131 AAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAATTGAG
157082 GAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAC--T-CATCACGGTTT
196 GAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCCATCACGGTTT
* ** ** *
157144 TAAGCTAAAAATGCGTTTCGGGATACCGACTAAGTTTTGCATGATTTTTGGCACGAAGAATCCTT
261 TAAGTTAAAAACACGTTTCGGG-GCCCGACTCAGTTTTGCATGATTTTTGGCACGAAGAATCCTT
157209 GAAATAT
325 GAAATAT
* *
157216 CTATATTCATTTAACTAAATCCCAGCCACATTAAATTGAAGTATTTGTTTTTACGAGCATCTGAA
1 CTATATTCATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
*
157281 TCATGTTTCGATTTAATTTGAAATTAATTCAGAAAAAAGTGGAAAAACGATATTAGAAGTGTGAA
66 TCATGTTTCGATTTAATTTGAAATTAATTCAGAAAAAAGTGGAAAAACGATATTAGAAGCGTGAA
* * *
157346 AAACCCTTCAATCTTTTGGGCTTTGAATTATATACATTTTATGAGAATTGTGGTCAAAAATTGAG
131 AAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAATTGAG
* * * *
157411 GAAGAATTTTTCTGATCAATTTGTACAAAATTTTAGCCGAAATCGTGTACTATCCATCACGGTTT
196 GAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCCATCACGGTTT
* ** * **
157476 TAAGTTAAATATGCGTTTTGGGATACCGACTCAGTTTTGCATGATTTTTGGCACGAAGAAAT-CT
261 TAAGTTAAAAACACGTTTCGGG-GCCCGACTCAGTTTTGCATGATTTTTGGCACGAAG-AATCCT
157540 TGAAATAT
324 TGAAATAT
* *
157548 CTATATTCATTTAACTAAACCCCAGCCACATTAAATTTAAGTATTTGTTTTTACGAGCATCTGAA
1 CTATATTCATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
* *
157613 TCATGTTTCGATTTAATTTGAAATTAATTTAGAAAAAAGTGGAAAAACGATATTAGAAGGGTGAA
66 TCATGTTTCGATTTAATTTGAAATTAATTCAGAAAAAAGTGGAAAAACGATATTAGAAGCGTGAA
157678 AAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAATTGAG
131 AAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAATTGAG
157743 GAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCCATCACGGTTT
196 GAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCCATCACGGTTT
*
157808 TAAGTTAAAAACACGTTTCGCGGCCCCGACTCAGTTTTGCATGATTTTTTGGCACGAAGAATCCT
261 TAAGTTAAAAACACGTTTCG-GGGCCCGACTCAGTTTTGCATGA-TTTTTGGCACGAAGAATCCT
157873 TGAA
324 TGAA
Statistics
Matches: 1238, Mismatches: 73, Indels: 21
0.93 0.05 0.02
Matches are distributed among these distances:
329 306 0.25
330 1 0.00
331 71 0.06
332 833 0.67
333 27 0.02
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (331 bp):
CTATATTCATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
TCATGTTTCGATTTAATTTGAAATTAATTCAGAAAAAAGTGGAAAAACGATATTAGAAGCGTGAA
AAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAATTGAG
GAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCCATCACGGTTT
TAAGTTAAAAACACGTTTCGGGGCCCGACTCAGTTTTGCATGATTTTTGGCACGAAGAATCCTTG
AAATAT
Found at i:157507 original size:661 final size:662
Alignment explanation
Indices: 156223--157876 Score: 2717
Period size: 661 Copynumber: 2.5 Consensus size: 662
156213 CGGTTTTTTG
* * *
156223 CTATATTCATCTAACTAAATCCCAGCCACATTAAATTTAAGGATCTGTTTTTACGAGCATCTGGA
1 CTATATTCATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
* * * * * * *
156288 TCATGTTTCGATGTAATTCGAAATTAATTTAGAAAAAAATTGGAAAAATGATATTAAAAGCCTTA
66 TCATGTTTCGATTTAATTTGAAATTAATTTAG-AAAAAAGTGGAAAAACGATATTAGAAGCGTGA
* * * *
156353 AAAACCCTTCAATCTTTTTGACTTTGAATTATATA-TTTTCTATGAGAATTGT-ACCAAAAATTG
130 AAAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTT-TATGAGAATTATGGCCAAAAATTG
* *
156416 AGGAAAAATTTTTCGGAGCAATTTTTGCAAAATTTTTGCCGAAATCGTGTACTATCCATCACGGT
194 AGGAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAC-ATCCATCACGGT
* *
156481 TTTAAGTTAAAAACACGTTTCGGGGCCGCGACTCAGTTTTGCATGATTTTTGGCTCGAAGAATCC
258 TTTAAGTTAAAAACACGTTTC-GGGCCCCGACTCAGTTTTGCATGATTTTTGGCACGAAGAATCC
* *
156546 TTGAAATATCTATATTCATTTAATTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGA
322 TTGAAATATCTATATTCATTTAACTAAATCCCAGCCACATTAAATTGAAGGATTTGTTTTTACGA
156611 GCATCTGAATCATGTTTCAATTTAATTTGAAATTAATTCAGAAAAAAGTGGAAAAACGATATTAG
387 GCATCTGAATCATGTTTCAATTTAATTTGAAATTAATTCAGAAAAAAGTGGAAAAACGATATTAG
* *
156676 AAGAGTGAAAAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGATAATTATGGCCA
452 AAGAGTGAAAAACCCTTCAATCTTTTGGGCTTTGAATTATATACATTTTATGAGAATTATGGCCA
* *
156741 AAAATTGAGGAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCCA
517 AAAATTGAGGAAAAATTTTTCGGATCAATTTGTACAAAATTTTAGCCGAAATCGTGTACTATCCA
* *
156806 TCACGGTTTTAAGTTAAAAACACGTTTCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCACGA
582 TCACGGTTTTAAGTTAAAAACACGTTTCGGGACACCGACTCAGTTTTGCATGATTTTTGGCACGA
156871 AG-AATCCTTGAAATAT
647 AGAAAT-CTTGAAATAT
*
156887 CTATATTTATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
1 CTATATTCATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
* *
156952 TCAAGTTTCGATTTAATTTGAAATTAATTCT-GAAAAAAGTGAAAAAACGATATTAGAAGCGTGA
66 TCATGTTTCGATTTAATTTGAAATTAATT-TAGAAAAAAGTGGAAAAACGATATTAGAAGCGTGA
*
157016 AAAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAATTGG
130 AAAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAATTGA
157081 GGAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAC-T-CATCACGGTTT
195 GGAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACATCCATCACGGTTT
* ** ** *
157144 TAAGCTAAAAATGCGTTTCGGGATACCGACTAAGTTTTGCATGATTTTTGGCACGAAGAATCCTT
260 TAAGTTAAAAACACGTTTCGGG-CCCCGACTCAGTTTTGCATGATTTTTGGCACGAAGAATCCTT
*
157209 GAAATATCTATATTCATTTAACTAAATCCCAGCCACATTAAATTGAAGTATTTGTTTTTACGAGC
324 GAAATATCTATATTCATTTAACTAAATCCCAGCCACATTAAATTGAAGGATTTGTTTTTACGAGC
*
157274 ATCTGAATCATGTTTCGATTTAATTTGAAATTAATTCAGAAAAAAGTGGAAAAACGATATTAGAA
389 ATCTGAATCATGTTTCAATTTAATTTGAAATTAATTCAGAAAAAAGTGGAAAAACGATATTAGAA
* * *
157339 GTGTGAAAAACCCTTCAATCTTTTGGGCTTTGAATTATATACATTTTATGAGAATTGTGGTCAAA
454 GAGTGAAAAACCCTTCAATCTTTTGGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAA
* *
157404 AATTGAGGAAGAATTTTTCTGATCAATTTGTACAAAATTTTAGCCGAAATCGTGTACTATCCATC
519 AATTGAGGAAAAATTTTTCGGATCAATTTGTACAAAATTTTAGCCGAAATCGTGTACTATCCATC
* ** * *
157469 ACGGTTTTAAGTTAAATATGCGTTTTGGGATACCGACTCAGTTTTGCATGATTTTTGGCACGAAG
584 ACGGTTTTAAGTTAAAAACACGTTTCGGGACACCGACTCAGTTTTGCATGATTTTTGGCACGAAG
157534 AAATCTTGAAATAT
649 AAATCTTGAAATAT
* *
157548 CTATATTCATTTAACTAAACCCCAGCCACATTAAATTTAAGTATTTGTTTTTACGAGCATCTGAA
1 CTATATTCATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
*
157613 TCATGTTTCGATTTAATTTGAAATTAATTTAGAAAAAAGTGGAAAAACGATATTAGAAGGGTGAA
66 TCATGTTTCGATTTAATTTGAAATTAATTTAGAAAAAAGTGGAAAAACGATATTAGAAGCGTGAA
157678 AAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAATTGAG
131 AAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAATTGAG
157743 GAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTATCCATCACGGTTT
196 GAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAC-ATCCATCACGGTTT
157808 TAAGTTAAAAACACGTTTCGCGGCCCCGACTCAGTTTTGCATGATTTTTTGGCACGAAGAATCCT
260 TAAGTTAAAAACACGTTTCG-GGCCCCGACTCAGTTTTGCATGA-TTTTTGGCACGAAGAATCCT
157873 TGAA
323 TGAA
Statistics
Matches: 918, Mismatches: 61, Indels: 21
0.92 0.06 0.02
Matches are distributed among these distances:
660 4 0.00
661 615 0.67
662 4 0.00
663 72 0.08
664 196 0.21
665 27 0.03
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (662 bp):
CTATATTCATTTAACTAAATCCCAGCCACATTAAATTTAAGGATTTGTTTTTACGAGCATCTGAA
TCATGTTTCGATTTAATTTGAAATTAATTTAGAAAAAAGTGGAAAAACGATATTAGAAGCGTGAA
AAACCCTTCAATCTTTTTGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAATTGAG
GAAAAATTTTTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACATCCATCACGGTTTT
AAGTTAAAAACACGTTTCGGGCCCCGACTCAGTTTTGCATGATTTTTGGCACGAAGAATCCTTGA
AATATCTATATTCATTTAACTAAATCCCAGCCACATTAAATTGAAGGATTTGTTTTTACGAGCAT
CTGAATCATGTTTCAATTTAATTTGAAATTAATTCAGAAAAAAGTGGAAAAACGATATTAGAAGA
GTGAAAAACCCTTCAATCTTTTGGGCTTTGAATTATATACATTTTATGAGAATTATGGCCAAAAA
TTGAGGAAAAATTTTTCGGATCAATTTGTACAAAATTTTAGCCGAAATCGTGTACTATCCATCAC
GGTTTTAAGTTAAAAACACGTTTCGGGACACCGACTCAGTTTTGCATGATTTTTGGCACGAAGAA
ATCTTGAAATAT
Done.