Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013723.1 Corchorus olitorius cultivar O-4 contig13756, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58852

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39394--39424
15
2.1
15
93
0
53
12
32
0
54
1.38
41551--41592
22
1.9
22
95
0
75
42
16
16
23
1.88
41552--41599
22
2.2
22
84
0
60
47
18
12
20
1.81
42967--43007
1
41.0
1
100
0
82
100
0
0
0
0.00
51727--51785
31
1.9
31
82
0
73
15
22
27
35
1.94
56531--56589
21
2.9
21
85
5
77
37
11
15
35
1.84
56639--56675
19
1.9
19
94
0
65
35
13
35
16
1.88
57478--57525
21
2.3
21
100
0
96
22
4
10
62
1.44
57536--57561
8
3.2
8
100
0
52
50
0
11
38
1.39
58762--58801
20
2.0
20
95
0
71
57
5
2
35
1.34

Tables:   1

The End!