Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013724.1 Corchorus olitorius cultivar O-4 contig13757, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52594

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48--91
20
2.2
20
100
0
88
15
31
22
29
1.95
8299--8339
2
21.0
2
95
5
75
48
0
0
51
1.00
8996--9026
16
1.9
16
93
0
53
48
9
0
41
1.36
36279--36440
60
2.7
60
87
4
222
35
18
19
26
1.95
36338--36441
31
3.4
31
70
15
108
37
19
18
25
1.94
36483--36643
60
2.7
60
87
1
216
24
19
18
37
1.94
36870--36907
20
1.9
20
84
10
51
26
13
7
52
1.67
40880--40906
1
27.0
1
100
0
54
0
0
0
100
0.00
42715--42754
10
4.2
10
90
9
66
52
27
0
20
1.46
44564--46861
322
7.0
327
80
6
2216
36
15
15
32
1.89
44547--46861
656
3.5
656
80
6
2441
36
15
15
32
1.89
46750--46987
125
1.9
127
83
6
315
34
15
21
28
1.94
47360--47670
166
1.9
167
89
3
484
37
14
12
35
1.83
47005--47981
499
2.0
494
85
4
1317
36
14
14
33
1.88
47501--48425
331
2.8
328
90
3
1435
37
15
15
31
1.90
48139--49715
332
5.0
297
73
15
978
37
15
15
32
1.89
48437--51048
332
7.9
332
88
2
3825
36
14
16
32
1.89
48437--51048
997
2.6
996
90
2
3971
36
14
16
32
1.89
50795--51308
260
2.0
261
92
1
863
37
15
15
31
1.89
50466--51641
593
2.0
593
89
2
1817
36
15
15
32
1.89
51053--52594
333
4.6
330
86
2
1878
35
15
15
32
1.90

Tables:   1

The End!