Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013730.1 Corchorus olitorius cultivar O-4 contig13763, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23022

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
959--1000
15
2.7
15
85
3
57
61
11
11
14
1.56
4818--4900
39
2.1
39
81
0
94
45
15
14
24
1.83
4871--4950
28
2.9
27
85
3
115
43
16
17
22
1.87
4866--4945
27
2.9
28
84
3
108
43
16
17
22
1.87
4926--5209
40
7.3
39
80
8
292
39
11
19
29
1.88
4926--5146
78
2.8
79
84
5
284
39
11
18
30
1.87
4926--5215
118
2.5
117
87
1
402
38
12
19
28
1.88
5083--5259
76
2.3
77
81
3
189
40
12
20
25
1.89
5309--5660
139
2.5
138
85
5
453
34
17
20
28
1.95
18846--18972
48
2.6
48
82
2
139
21
37
13
28
1.91

Tables:   1

The End!