Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013739.1 Corchorus olitorius cultivar O-4 contig13772, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26707

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1958--2105
60
2.5
59
87
2
206
38
17
17
26
1.92
2145--2303
31
5.3
30
68
14
94
28
20
16
33
1.94
2176--2274
29
3.3
29
75
10
110
32
21
14
32
1.93
2143--2303
60
2.7
60
91
0
268
29
20
16
33
1.95
8148--8560
46
9.1
45
87
6
557
36
14
6
43
1.71
12013--12052
15
2.6
16
96
4
73
87
0
12
0
0.54
12013--12052
16
2.4
16
91
4
62
87
0
12
0
0.54
13364--13416
28
1.9
28
84
3
72
26
20
15
37
1.92
15099--15515
212
2.0
212
89
1
649
34
11
29
24
1.91
17533--17572
19
2.1
19
95
0
71
42
10
20
27
1.83
23359--23417
30
2.0
30
90
3
93
35
5
18
40
1.73
23365--23427
30
2.2
30
82
5
76
36
6
17
39
1.75

Tables:   1

The End!