Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001374.1 Corchorus olitorius cultivar O-4 contig01374, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 609

Length: 1016
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32


Found at i:549 original size:2 final size:2

Alignment explanation


    Indices: 542--582  Score: 55
    Period size: 2  Copynumber: 20.0  Consensus size: 2

        532 CTCGTACTTT

                               *                                 *      
        542 TA TA TA TA GTA TA GA TA TA TA TA TA TA TA TA TA TA TC TA TA
          1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

        583 CTATTCTTCA


Statistics
Matches: 34,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
   2   32  0.94
   3    2  0.06

ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46


Consensus pattern (2 bp):   
TA

Done.