Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013744.1 Corchorus olitorius cultivar O-4 contig13777, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5297
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:1382 original size:29 final size:31

Alignment explanation


    Indices: 1322--1391  Score: 92
    Period size: 29  Copynumber: 2.3  Consensus size: 31

       1312 TGACACTAAA

                                        *   
       1322 TTGTAAGTA-GAGGGACCAAATTGATA-GTTT
          1 TTGTAAGTAGGA-GGACCAAATTGATACCTTT

                                     *     
       1352 TTGT-AGTAGGAGGACCAAATTGATCCCTTT
          1 TTGTAAGTAGGAGGACCAAATTGATACCTTT

                      
       1382 TTGTAAGTAG
          1 TTGTAAGTAG

       1392 AGGGACCTGT


Statistics
Matches: 35,  Mismatches: 2, Indels: 5
        0.83            0.05        0.12

Matches are distributed among these distances:
  29   17  0.49
  30   13  0.37
  31    5  0.14

ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34


Consensus pattern (31 bp):   
TTGTAAGTAGGAGGACCAAATTGATACCTTT

Done.