Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013746.1 Corchorus olitorius cultivar O-4 contig13779, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15678
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33


Found at i:10891 original size:15 final size:17

Alignment explanation


    Indices: 10871--10910  Score: 50
    Period size: 15  Copynumber: 2.5  Consensus size: 17

      10861 TATCATTATT

                             
      10871 CTGTTGTG-CTGTTG-C
          1 CTGTTGTGACTGTTGTC

                            *
      10886 CTGTTG-GACTGTTGTG
          1 CTGTTGTGACTGTTGTC

                     
      10902 CTGTTGTGA
          1 CTGTTGTGA

      10911 TGGTTTATAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 4
        0.81            0.04        0.15

Matches are distributed among these distances:
  14    1  0.05
  15   12  0.57
  16    6  0.29
  17    2  0.10

ACGTcount: A:0.05, C:0.15, G:0.35, T:0.45


Consensus pattern (17 bp):   
CTGTTGTGACTGTTGTC
Done.