Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013747.1 Corchorus olitorius cultivar O-4 contig13780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55544

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1946--2010
27
2.4
27
87
5
87
36
27
18
16
1.93
5398--5467
30
2.4
31
81
13
85
45
15
8
30
1.76
10539--10574
16
2.2
16
95
0
63
22
22
19
36
1.95
14387--14423
18
2.1
18
89
0
56
45
5
10
37
1.62
18966--19670
40
17.6
40
74
11
427
16
24
20
38
1.93
18966--19673
80
8.9
79
78
9
620
16
24
20
38
1.93
18966--19673
120
5.9
118
79
9
704
16
24
20
38
1.93
19123--19185
31
2.0
31
90
6
101
15
25
23
34
1.95
19086--19228
72
2.0
71
90
4
225
16
25
20
36
1.94
19043--19265
112
2.0
111
84
6
290
17
25
21
36
1.94
21829--21873
14
3.4
14
71
22
51
35
13
15
35
1.87
21820--21873
26
2.1
26
100
0
108
35
14
14
35
1.88
23023--23054
16
2.0
16
93
0
55
6
21
3
68
1.26
27467--28288
165
5.0
162
90
2
1270
29
19
20
30
1.97
27467--28288
328
2.5
324
92
1
1328
29
19
20
30
1.97
28347--28421
32
2.4
31
82
6
87
25
24
24
26
2.00
35103--35132
15
2.1
14
93
6
51
13
6
10
70
1.34
36183--36274
28
3.5
27
68
18
77
34
15
5
44
1.69
36152--36274
50
2.5
50
94
0
210
34
17
5
42
1.73
37827--37866
12
3.3
12
93
6
64
57
0
42
0
0.98
42585--42624
12
3.3
12
93
6
64
57
0
42
0
0.98
44419--44499
41
2.0
41
97
0
153
35
0
9
54
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46252--46323
19
3.8
18
78
14
74
29
2
9
58
1.44

Tables:   1

The End!