Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013751.1 Corchorus olitorius cultivar O-4 contig13784, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65630

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1772--2030
128
2.0
128
90
5
407
50
1
9
37
1.46
5171--5218
24
2.0
24
87
0
69
25
25
14
35
1.94
5300--5324
13
1.9
13
100
0
50
56
0
0
44
0.99
5533--5664
66
2.0
66
100
0
264
33
13
16
36
1.88
6040--6078
21
1.9
20
94
5
69
51
2
5
41
1.38
10314--10403
44
2.0
44
95
0
162
25
24
8
41
1.84
19742--19799
20
2.8
21
86
2
91
29
6
22
41
1.80
29394--29655
91
2.9
91
90
2
386
33
13
15
37
1.87
29992--30077
44
2.0
44
90
0
136
20
31
37
10
1.87
29925--30149
115
1.9
116
94
0
398
24
28
34
12
1.92
30036--30220
72
2.6
72
90
0
271
25
26
33
14
1.94
31145--31208
5
12.8
5
96
0
119
40
0
1
57
1.08
32249--32389
74
1.9
75
88
4
214
24
26
23
26
2.00
34633--34671
4
9.8
4
100
0
78
25
0
23
51
1.49
35806--35845
2
20.0
2
89
0
62
55
0
0
45
0.99
37364--37401
12
3.1
12
92
3
58
42
2
0
55
1.14
38092--38130
20
2.0
20
89
0
60
7
7
17
66
1.40
40548--40604
29
2.0
29
96
0
105
38
7
28
26
1.82
41453--41499
20
2.3
20
92
0
76
63
14
2
19
1.40
46057--46093
17
2.2
18
90
9
60
21
0
21
56
1.42
64973--65022
2
26.5
2
88
11
79
52
0
0
48
1.00

Tables:   1

The End!