Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013754.1 Corchorus olitorius cultivar O-4 contig13787, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9453
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:58 original size:2 final size:2

Alignment explanation


    Indices: 51--82  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

         41 AAATGATTAT

                                                           
         51 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

         83 GAGGATAATC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:806 original size:12 final size:12

Alignment explanation


    Indices: 789--814  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        779 AATATCTTTA

                        
        789 TAATTAAATAGT
          1 TAATTAAATAGT

                        
        801 TAATTAAATAGT
          1 TAATTAAATAGT

              
        813 TA
          1 TA

        815 TAAAGATATC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42


Consensus pattern (12 bp):   
TAATTAAATAGT
Done.