Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013755.1 Corchorus olitorius cultivar O-4 contig13788, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28064

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3094--3206
21
5.4
21
95
2
192
26
26
18
28
1.98
13261--13298
18
2.1
18
90
0
58
13
13
21
52
1.73
13994--14057
2
32.0
2
80
0
74
45
4
4
45
1.45
14082--14237
75
2.1
75
97
0
294
30
10
22
36
1.87
24157--24271
45
2.6
44
86
5
142
37
17
12
33
1.87
24157--24222
22
3.0
22
71
10
62
36
18
10
34
1.85
24173--24248
22
3.5
21
75
10
73
35
14
13
36
1.85
24241--24295
22
2.4
23
84
3
76
40
18
10
30
1.85
24164--24295
45
2.9
45
83
8
110
37
15
12
34
1.85
24325--24375
22
2.3
23
82
6
68
39
11
9
39
1.75
24345--24593
22
11.6
22
66
16
101
37
13
8
41
1.74
24693--25128
22
20.0
22
68
14
143
34
16
9
39
1.81
24962--25344
44
8.8
43
68
13
164
37
17
8
35
1.81
25159--25341
22
8.2
21
73
12
57
38
18
8
34
1.81
25213--25339
66
1.9
66
88
3
193
36
16
11
36
1.84
25506--25544
20
2.0
20
85
10
53
64
2
5
28
1.28
25557--25881
165
2.0
164
84
5
433
45
8
10
36
1.68

Tables:   1

The End!